Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 165 8e-36 >seq2 Length=1259180 Score = 165 bits (182), Expect = 8e-36 Identities = 167/215 (78%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | |||||| || || |||||||||||||| | | ||| || |||| Sbjct 897875 AAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGACCGTC 897934 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| || ||| | || || | |||||| || || ||||| ||||| || || Sbjct 897935 CTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTTGTC 897994 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||||||||| ||| ||| | ||||| || || ||||| | ||||| || Sbjct 897995 TTGGA-TTTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTACTTCCAAAGTTATGG 898053 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || ||||||||||||||||||||||||||| Sbjct 898054 TCTTACCCGTCAAAGTTTTTACGAAAATTTGCATT 898088 Score = 102 bits (112), Expect = 8e-17 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | |||||| || || |||||||||||||| | | ||| || |||| Sbjct 896843 AAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGACCGTC 896902 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| || ||| | || || | |||||| || || ||||| ||||| || || Sbjct 896903 CTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTTGTC 896962 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATC 64383 ||| | |||||||| ||| ||| | ||||| Sbjct 896963 TTGGA--TTTTGCTTGACATTCTCGATAGTATC 896993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||| | || || |||| || |||||||| || || |||||||||||||| || || || Sbjct 898661 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGCGGAATTCCTTCTTTATCCTGAATC 898720 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||||||| || | ||| ||| || |||||||||| || | || ||||| Sbjct 898721 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCCACTTCTAAGGTGATTGTTTTGCCC 898780 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || || || ||||||||||| Sbjct 898781 GTTAACGTCTTCACAAAAATTTGCAT 898806 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || || ||||| || || || ||||| || ||||||| ||||||| Sbjct 899425 CCAGCAAAAATCAGGCGTTGTTGGTCTGGCGGGATACCTTCCTTATCTTGTA-TTTTTGC 899483 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| || | || || || |||||||| | ||| | ||||| || || || Sbjct 899484 TTTGACATTTTCAATCGTGTCTGAAGCCTCCACTTCAAGAGTAATCGTCTTCCCAGTTAA 899543 Query 64423 AGTTTTTACGAAAATTTGCATTTTAATAATGATA 64456 || || |||||||||||||| || |||| ||| Sbjct 899544 TGTCTTCACGAAAATTTGCATGTTTGTAATTATA 899577 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 64311 AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAA 64370 ||||||| ||||||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 898303 AAATGAGTCGCTGCTGGTCAGGAGGGATACCTTCTTTATCCTGGATTTTGGCCTTTACAT 898362 Query 64371 CCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTA 64430 || | ||||| || ||||| || | |||| || ||||| || | ||||| | Sbjct 898363 TTTCGATCGTATCCGACGCCTCCACCTCCAGTGTTATAGTTTTGCCAGTAAGTGTTTTAA 898422 Query 64431 CGAAAATTTGCAT 64443 | ||||| ||||| Sbjct 898423 CAAAAATCTGCAT 898435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499608800592160