Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq86 136 2e-26 seq21 136 2e-26 seq328 95.1 5e-14 seq2 93.3 2e-13 >seq86 Length=232636 Score = 136 bits (150), Expect = 2e-26 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || || || || || ||||| || | || ||||||||||| || |||||| | ||| Sbjct 53177 TACAAGGGAGAGACGAAAACCTTCACACCAGAAGAAATTTCGTCGATGGTTTTGGTCAAA 53118 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| || || || ||| | | | ||| | | || | ||||| || || || || Sbjct 53117 ATGAAGGAGACGGCTGAAGCTTTTCTGGGTCATGCGGTGAAAGATGCTGTTATCACAGTC 53058 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 ||||| || || || || ||||||| ||||||||||||||| | || ||||||||| Sbjct 53057 CCCGCCTACTTTAACGACTCACAACGACAAGCAACTAAAGATTCTGGTGCAATTGCTGGT 52998 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 |||| || ||||| ||||| || ||||| ||||| |||||| | || ||||| Sbjct 52997 CTAAACGTCCTTCGTATTATCAACGAACCAACAGCTGCTGCTATTGCTTATGG 52945 Score = 100 bits (110), Expect = 1e-15 Identities = 186/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 452219 ATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTT 452278 ||||| || | |||||||||||||| ||||| ||| |||||| || || |||| Sbjct 51643 ATTCAGGTTTACGAAGGAGAACGTGCTATGACCAAAGACAATAATTTGCTTGGTAAATTC 51584 Query 452279 ACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGAT 452338 | || ||||| ||| || | || |||||||||||| | || | |||| Sbjct 51583 GAGTTGTCTGGAATTCCACCTGCTCCTCGTGGTGTGCCTCAAATTGAAGTCACATTTGAT 51524 Query 452339 GTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAA 452398 ||||||| || ||||| || ||||| |||| || ||||| | || ||| | | Sbjct 51523 ATTGATGCGAACGGTATCCTGAATGTTTCTGCACAGGATAAATCCACAGGCAAACAAAAC 51464 Query 452399 AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458 || || |||||||| ||||||||| ||||| || || || || || || ||||| Sbjct 51463 AAGATAACAATTACAAATGATAAAGGGCGTTTGTCGAAGGATGAGATCGAGCGGATGGTG 51404 Query 452459 GATGAAGCAGAAAAATTCAAGGATGATGATGAA 452491 | || || || || | ||| | ||||||||| Sbjct 51403 CAGGAGGCCGAGAAGTACAAAGCAGATGATGAA 51371 >seq21 Length=496054 Score = 136 bits (150), Expect = 2e-26 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 ||||| || || |||||||| |||||| | ||||| || |||||||| |||| || Sbjct 297535 AAAACCTTCGCCCCTGAAGAGATTTCAGCAATGGTACTCGGCAAAATGAAGGAAATTGCG 297476 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| |||| | || ||| ||||||| | || || |||||||| || ||| Sbjct 297475 GAAGCATATCTAGGAAAGAAAGTGGAACATGCAGTGGTCACGGTACCCGCTTACTTTAAT 297416 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 |||||||| || ||||| || ||||||||||| ||||||||| | |||||| | || Sbjct 297415 GATGCACAGCGTCAAGCTACCAAAGATGCAGGTACTATTGCTGGCCTCAATGTTGTCCGC 297356 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 || || ||||||||||| || |||||| | || ||||| Sbjct 297355 ATCATCAATGAACCTACGGCTGCTGCTATCGCTTATGG 297318 >seq328 Length=76053 Score = 95.1 bits (104), Expect = 5e-14 Identities = 69/79 (87%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 14008 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 13951 Query 509566 GTCCCACATAAGGCTCCAA 509584 |||||||| | ||| |||| Sbjct 13950 GTCCCACAGAGGGCGCCAA 13932 Score = 91.5 bits (100), Expect = 6e-13 Identities = 68/79 (86%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 14008 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 13951 Query 511715 ATCCCACATAAGGCTCCAA 511733 ||||||| | ||| |||| Sbjct 13950 GTCCCACAGAGGGCGCCAA 13932 Score = 91.5 bits (100), Expect = 6e-13 Identities = 68/79 (86%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 14008 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 13951 Query 510801 ATCCCACATAAGGCTCCAA 510819 ||||||| | ||| |||| Sbjct 13950 GTCCCACAGAGGGCGCCAA 13932 >seq2 Length=1259180 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||||||||| || ||||||||||||||||| || || || ||| ||||| Sbjct 899193 ATGCAGATTTTCGTTAAAACTCTTACTGGTAAAACTATTACACTGGAGGTGGAAGCATCT 899134 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | |||| ||||| || ||||| || || || || || |||||| Sbjct 899133 GACACGATCGAGAATGTTAAGGCGAAAATCCAGGATAAAGAGGGGATCCCACCAGATCAA 899074 Query 391170 CAACGTTTAATTTT 391183 || || |||| || Sbjct 899073 CAGCGACTAATCTT 899060 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || ||| | ||||| || || ||||||||||| || || | || Sbjct 899564 ATGCAAATTTTCGTGAAGACATTAACTGGGAAGACGATTACTCTTGAAGTGGAGGCTTCA 899505 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| |||||| |||||||||||||| || || || || ||| Sbjct 899504 GACACGATTGAAAATGTCAAAGCAAAAATACAAGATAAGGAAGGTATCCCGCCAGACCAA 899445 Query 391170 CAACGTTTAATTTT 391183 ||||| | ||||| Sbjct 899444 CAACGCCTGATTTT 899431 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| ||||||||||| ||||| |||||||| || || || || || | || Sbjct 898435 ATGCAGATTTTTGTTAAAACACTTACTGGCAAAACTATAACACTGGAGGTGGAGGCGTCG 898376 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || ||||| || ||||| ||||| || |||||||| || Sbjct 898375 GATACGATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAAGGTATCCCTCCTGACCAG 898316 Query 391170 CAACGTTTAATTTTCTCAGG 391189 || || | |||||| |||| Sbjct 898315 CAGCGACTCATTTTCGCAGG 898296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975572490726512