Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq86 168 5e-36 seq21 107 1e-17 seq438 96.9 3e-14 >seq86 Length=232636 Score = 168 bits (186), Expect = 5e-36 Identities = 261/370 (71%), Gaps = 7/370 (2%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||||| |||| ||||||||| |||||||| || ||||| | | || Sbjct 52933 TTCTTGTCCAAACCATAAGCAATAGCAGCAGCTGTTGGTTCGTTGATAATACGAAGGACG 52992 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||||||| || | ||||||||| ||||||| |||||| |||||||| || Sbjct 52993 TTTAGACCAGCAATTGCACCAGAATCTTTAGTTGCTTGTCGTTGTGAGTCGTTAAAGTAG 53052 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || || ||||| ||||| | || | | ||| | | |||| ||||| | Sbjct 53053 GCGGGGACTGTGATAACAGCATCTTTCACCGCATGACCCAGAAAAGCTTCAGCCGTCTCC 53112 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATATTGCTTGGATTCAT 518402 |||||||| |||| ||| || ||||||| ||||| | ||| || || | || Sbjct 53113 TTCATTTTGACCAAAACCATCGACGAAATTTCTTCTGGTGTGAAGGTT--TTCGTCTCTC 53170 Query 518403 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 518459 | ||| || | | | |||||| | |||| |||| | ||||||||||||| Sbjct 53171 CCTTGTATTCAACCTGCACTTTTGGTTTACCACCACCAGCATTCACTACTTTAAATGGCC 53230 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 ||| ||||||||||||||| || ||||| ||| | | |||||| | ||| || | Sbjct 53231 AGTGTTTCATATCTGATTGCACTGACCCGTCATCAAACTTACGACCAATCAGTCGCTTCG 53290 Query 518520 CATCAAAAAT 518529 |||| |||| Sbjct 53291 CATCTGAAAT 53300 Score = 102 bits (112), Expect = 6e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269 || ||| ||||| || || || || |||| ||| |||||||| |||| ||||| Sbjct 51443 ATCATTTGTAATTGTTATCTTGTTTTGTTTGCCTGTGGATTTATCCTGTGCAGAAACATT 51502 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 || ||||| || ||||| | |||||||||||||||||||||||| || || | |||| Sbjct 51503 CAGGATACCGTTCGCATCAATATCAAATGTGACTTCAATTTGAGGCACACCACGAGGAGC 51562 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389 |||||| || || ||| | ||| | || || |||||| ||||| || | || Sbjct 51563 AGGTGGAATTCCAGACAACTCGAATTTACCAAGCAAATTATTGTCTTTGGTCATAGCACG 51622 Query 517390 TTCACCCTCGAAAA 517403 ||| || ||| ||| Sbjct 51623 TTCTCCTTCGTAAA 51636 Score = 95.1 bits (104), Expect = 9e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 |||| ||| || |||||| |||||| |||||| |||||||||||| ||||| ||| | Sbjct 53406 AAAACAGTGTTATGTGGATTCATTGCAACTTGATTTTTGGCTGCATCACCAATGAGACGC 53465 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 || || || ||||||| ||||| ||||| ||||| || |||||| Sbjct 53466 TCAGTATCCGTAAATGCTACATACGATGGTGTTGTTCGGTTACCT 53510 >seq21 Length=496054 Score = 107 bits (118), Expect = 1e-17 Identities = 158/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| | ||||| || | ||||||||| || |||||||| || || | | |||| Sbjct 297306 TTCTTATCCAACCCATAAGCGATAGCAGCAGCCGTAGGTTCATTGATGATGCGGACAACA 297365 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| | ||||||||||| || ||||| | |||| ||| ||||| || Sbjct 297366 TTGAGGCCAGCAATAGTACCTGCATCTTTGGTAGCTTGACGCTGTGCATCATTAAAGTAA 297425 Query 518285 GCAGGAACAGTAATAACGGCATCAGTT--ACTTCTTTACCAATATAAGCGCTTGCCGTTT 518342 || || || || | || |||| ||| |||| || || | ||| || || ||| Sbjct 297426 GCGGGTACCGTGACCACTGCAT--GTTCCACTTTCTTTCCTAGATATGCTTCCGCAATTT 297483 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384 |||||||| | | | ||||| |||||| | ||| |||| Sbjct 297484 CCTTCATTTTGCCGAGTACCATTGCTGAAATCTCTTCAGGGG 297525 >seq438 Length=48607 Score = 96.9 bits (106), Expect = 3e-14 Identities = 116/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 668854 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACG 668913 ||| |||||||| || || ||||||||||||||||| ||||| || ||| | || || || Sbjct 35445 AGGAAAAGAAGGCCGAATCAGAGGAAATTTGATGGGTAAACGAGTGGATTTCTCAGCTCG 35504 Query 668914 TACAGTTATTACTTCTGATCCCAATATTGCTC-TCAATGAAGTTGGTGTTCCTCTTATTA 668972 || || ||||| | ||| |||| |||| | | || ||||||||| |||| || || Sbjct 35505 AACTGTGATTACACCAGAT-CCAAACTTGCCCATAGATACAGTTGGTGTACCTCGTACTA 35563 Query 668973 TTGCTAAAAATCTTACTTTTGACGAAATTGTAACA 669007 |||| ||||| | || || |||||||| ||| Sbjct 35564 TTGCACAAAATATGACATTCCCAGAAATTGTTACA 35598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780536371333384