Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 147 5e-30 seq13 123 6e-23 >seq2 Length=1259180 Score = 147 bits (162), Expect = 5e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || || || ||||| || ||||| |||||||| | | || | || || || Sbjct 897878 AACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGACCGTCCTC 897937 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| |||| || || || || ||||||||||| |||||||| Sbjct 897938 CAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTG 897997 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||||| ||||| || || |||||| || ||||| | || | ||||| Sbjct 897998 GATTTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTACTTCCAAAGTTATGGTCTT 898057 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||||||||||||||| | ||||||| Sbjct 898058 ACCCGTCAAAGTTTTTACGAAAATTTGCATT 898088 Score = 116 bits (128), Expect = 8e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || || || |||||||||||||| || || ||||| || ||||| |||||| Sbjct 899423 TACCAGCAAAAATCAGGCGTTGTTGGTCTGGCGGGATACCTTCCTTATCTTGTATTTTTG 899482 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||| || ||||| ||||| ||| ||||||||||| |||| |||||| || || | Sbjct 899483 CTTTGACATTTTCAATCGTGTCTGAAGCCTCCACTTCAAGAGTAATCGTCTTCCCAGTTA 899542 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 899543 ATGTCTTCACGAAAATTTGCAT 899564 Score = 111 bits (122), Expect = 3e-19 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || || || ||||| || ||||| |||||||| | | || | || || || Sbjct 896846 AACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGACCGTCCTC 896905 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| |||| || || || || ||||||||||| |||||||| Sbjct 896906 CAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTG 896965 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTC 195095 | ||||||||||| ||||| || || |||||| || ||||| Sbjct 896966 GA--TTTTGCTTGACATTCTCGATAGTATCCGAAGCCTCTACTTC 897008 >seq13 Length=582103 Score = 123 bits (136), Expect = 6e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| || |||||||| |||||||| || |||||||||||||| || |||||||| Sbjct 196596 TTACCTGCAAAAATAAGTCGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGAATTTTA 196537 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || |||||||| ||||| || ||| || |||||||| | ||| |||||||| Sbjct 196536 GCTTTCACATTCTCAATAGTGTCAGACGATTCTACCTCAAGGGTGATCGTTTTTCCTGTT 196477 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 196476 AATGTCTTCACGAATATCTGCAT 196454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109399663396988