Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq86 159 3e-33 seq21 120 2e-21 seq2 100 2e-15 seq67 89.7 4e-12 >seq86 Length=232636 Score = 159 bits (176), Expect = 3e-33 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 |||||||| ||||||| || |||||||| | |||||||| | || || |||||| Sbjct 53152 CACCAGAAGAAATTTCGTCGATGGTTTTGGTCAAAATGAAGGAGACGGCTGAAGCTTTTC 53093 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | ||||| | || | ||||| || || || || || || || ||||| |||||||||| Sbjct 53092 TGGGTCATGCGGTGAAAGATGCTGTTATCACAGTCCCCGCCTACTTTAACGACTCACAAC 53033 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | ||||| ||||||||| |||| |||||||| || || || |||||||||||||| | Sbjct 53032 GACAAGCAACTAAAGATTCTGGTGCAATTGCTGGTCTAAACGTCCTTCGTATTATCAACG 52973 Query 550500 AACCTACTGCTGCTGCACTTGCATATGG 550527 |||| || |||||||| |||| ||||| Sbjct 52972 AACCAACAGCTGCTGCTATTGCTTATGG 52945 Score = 105 bits (116), Expect = 5e-17 Identities = 187/268 (70%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 551960 CACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGC 552019 || |||||| | ||||| || || ||||| ||||| | | || |||| || | || Sbjct 52349 CAGTATTGAGATTGATTCGTTGTTCGAGGGGATTGACTTCTACACAAATATTACGCGTGC 52290 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 |||||||| ||||| ||||||| || | |||||| || || || ||| ||| Sbjct 52289 TCGCTTTGAAGAACTTTGTGCTGATCTTTTCCGCTCAACAATGGATCCGGTTGAAAAAGC 52230 Query 552080 TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 ||| | ||| | || || |||||| | |||| ||||| |||||| | || ||||| || Sbjct 52229 ATTACGTGATGCTAAAATGGATAAAGCTCAAGTTCATGATATTGTGTTAGTGGGTGGGTC 52170 Query 552140 TACAAGAATTCCTAAAATTCGCGAAA----TGTTA-AGTTCTTATTTCAATGGTAAAAAA 552194 ||| | || || ||| | | ||| ||| | | ||||| ||| ||||||| || Sbjct 52169 GACACGTATCCCAAAAGTGCA-GAAGCTCCTGTCAGATTTCTT--TTC--TGGTAAAGAA 52115 Query 552195 TTAAATGAAAGTGTTAATCCAGATGAGG 552222 || ||| |||| | ||||||||||||| Sbjct 52114 TTGAATAAAAGCATCAATCCAGATGAGG 52087 Score = 96.9 bits (106), Expect = 3e-14 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 552434 TACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTAC 552493 || |||||| ||| ||||||||| | | || ||||| |||||| ||||||| Sbjct 51647 TAAAATTCAGGTTTACGAAGGAGAACGTGCTATGACCAAAGACAATAATTTGCTTGGTAA 51588 Query 552494 TTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTT 552553 || | || || ||||| |||||||||||||| || || ||||||||||| || || Sbjct 51587 ATTCGAGTTGTCTGGAATTCCACCTGCTCCTCGTGGTGTGCCTCAAATTGAAGTCACATT 51528 Query 552554 CGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||||| ||||| || || || ||||||| |||| |||||||| Sbjct 51527 TGATATTGATGCGAACGGTATCCTGAATGTTTCTGCACAGGATAAATC 51480 Score = 95.1 bits (104), Expect = 1e-13 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 552220 AGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAA 552279 |||| || || || ||||| ||| | |||||||||||||||||||| | | ||| Sbjct 51957 AGGCCGTGGCATACGGTGCAGCAGTGCAAGCAGCTATTCTTTCTGGTGATAAGTCGGAAG 51898 Query 552280 AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTG 552339 ||||| || | |||| | || || | || || || |||||| ||||||||| || Sbjct 51897 CCGTACAAGATTTGTTACTGCTTGACGTCGCACCACTTTCACTTGGTATAGAAACAGCTG 51838 Query 552340 GAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTC 552396 | || |||||||| ||||||| | | || |||||||||||| |||| |||| Sbjct 51837 GGGGCGTTATGACTGCTCTTATCAAGCGGAACACTACTATTCCTACGAAAACTTCTC 51781 >seq21 Length=496054 Score = 120 bits (132), Expect = 2e-21 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | || ||||| || || |||||||| |||| ||||||||||| ||||||| Sbjct 297447 ATGCAGTGGTCACGGTACCCGCTTACTTTAATGATGCACAGCGTCAAGCTACCAAAGATG 297388 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||||||||| || |||||| | || || |||||||||||||| |||||||| Sbjct 297387 CAGGTACTATTGCTGGCCTCAATGTTGTCCGCATCATCAATGAACCTACGGCTGCTGCTA 297328 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| | ||||| Sbjct 297327 TCGCTTATGGGTTGGATAA 297309 Score = 100 bits (110), Expect = 2e-15 Identities = 167/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 550019 TATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGT 550078 || || ||||| || |||| ||| ||| ||| ||||| ||||||||||| |||||| Sbjct 297921 TACAGCTGTGTCGGCGTTTATAAAAGTGGACGAGTGGAAATCATTGCCAATGAACAAGGT 297862 Query 550079 AACAGAACTACTCCATCTTATGTTTCTTTCAC-GGAAA-----CTGAACATTTAGTTGGT 550132 || ||| ||| || || || || | ||||| || | ||| | | | ||||| Sbjct 297861 AATCGAATTACGCCTTCGTACGTGGCATTCACTGGTGATGGTGGTGAGCGTCTTATTGGT 297802 Query 550133 GATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGT 550192 ||||| || ||| | || || ||||| | |||||| | ||||||| ||| ||| Sbjct 297801 GATGCTGCTAAAAACCAGTTAACAACAAATCCGAAAAATACTGTCTTTGATGTTAAGCGT 297742 Query 550193 TTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 | ||||| || | ||| ||| ||||||| ||| |||||| || || ||||||||| Sbjct 297741 CTGATTGGTCGAGAATATAAGGATCCGACTGTACAGCAAGATATTAAACACTGGCCTTTC 297682 >seq2 Length=1259180 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || ||||| || || || || ||| |||||||| | || || | Sbjct 897870 AGACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGA 897929 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || || || ||||| ||||| || ||||| |||||||| || ||||| ||||| Sbjct 897930 CCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCC 897989 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGT-GTGAGTACATTCGAGAGT 563435 || ||||| |||||| ||| || ||| || ||||| | | ||| ||| | ||| Sbjct 897990 TTGTCTTGGATTTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTAC-TTCCAAAGT 898048 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||| || | |||||| |||||||||||||| Sbjct 898049 TATGGTCTTACCCGTCAAAGTTTTTACGAAAATTTGCAT 898087 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| || |||| || ||||| || || || || |||||||| || ||||| Sbjct 899054 CCGGCAAAGATTAGTCGCTGTTGATCTGGTGGGATCCCCTCTTTATCCTGGATTTTCGCC 899113 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| || || |||| || | || || || |||| ||||||||||||||| Sbjct 899114 TTAACATTCTCGATCGTGTCAGA-TGCTTCCACCTCCAGTGTAATAGTTTTACCAGTAAG 899172 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||||||||||||| ||||| Sbjct 899173 AGTTTTAACGAAAATCTGCAT 899193 >seq67 Length=267328 Score = 89.7 bits (98), Expect = 4e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | || |||||||| ||||| || || ||||| || ||||| || | Sbjct 75051 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTAGCT 75110 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| |||||||||||| | | || | | || || |||| || |||||||| | Sbjct 75111 TTTACATTCTCAATTGTATCCGAG-GATTCGACCTCAAGTGTAATCGTCTTACCAGTTAA 75169 Query 563454 AGTTTTAACGAAAATTTGCATAG 563476 || || |||||||||||||||| Sbjct 75170 TGTCTTGACGAAAATTTGCATAG 75192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028991173684360