Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq13 141 7e-29 seq2 114 1e-20 >seq13 Length=582103 Score = 141 bits (156), Expect = 7e-29 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || | |||||||| || |||||||||||||||||||| |||||||| Sbjct 196596 TTACCTGCAAAAATAAGTCGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGAATTTTA 196537 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | ||||||||||| ||| || ||||| |||| |||||| || ||| Sbjct 196536 GCTTTCACATTCTCAATAGTGTCAGACGATTCTACCTCAAGGGTGATCGTTTTTCCTGTT 196477 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || ||||||||||| Sbjct 196476 AATGTCTTCACGAATATCTGCAT 196454 >seq2 Length=1259180 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||| |||| || || || | |||||| ||||| |||||||| ||||||||||| ||||| Sbjct 898661 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGCGGAATTCCTTCTTTATCCTGAATC 898720 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || |||||| |||| | |||||||| | |||||||| | |||| |||||||| Sbjct 898721 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCCACTTCTAAGGTGATTGTTTTGCCC 898780 Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||| || ||||| Sbjct 898781 GTTAACGTCTTCACAAAAATTTGCAT 898806 Score = 113 bits (124), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATA--GTTCTG 101311 ||| | ||| | ||| || || || || || || || |||||||| ||||| || | Sbjct 897872 ACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATC--CGATAAGGTACGA 897929 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || |||| ||||| || ||||| |||| | ||| ||||| || ||||||||||| Sbjct 897930 CCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCC 897989 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || ||||| |||||| ||| ||| | || | ||| || || | || ||||| | ||| Sbjct 897990 TTGTCTTGGATTTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTACTTCCAAAGTT 898049 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || || ||||||||||| || || ||||| Sbjct 898050 ATGGTCTTACCCGTCAAAGTTTTTACGAAAATTTGCAT 898087 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| || ||||| || ||||| || ||||| |||||||| |||||| Sbjct 899423 TACCAGCAAAAATCAGGCGTTGTTGGTCTGGCGGGATACCTTCCTTATCTTGTATTTTTG 899482 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | ||||| || | |||||||||||||| | ||| || || |||| Sbjct 899483 CTTTGACATTTTCAATCGTGTCTGAAGCCTCCACTTCAAGAGTAATCGTCTTCCCAGTTA 899542 Query 101448 AAGTTTTTACAAATATCTGCATGGTT 101473 | || || || || || |||||| || Sbjct 899543 ATGTCTTCACGAAAATTTGCATGTTT 899568 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 ||||||| || || | ||||| || || || || || ||||||||||| || ||||| Sbjct 898294 TACCTGCGAAAATGAGTCGCTGCTGGTCAGGAGGGATACCTTCTTTATCCTGGATTTTGG 898353 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 |||||| |||| | || || |||| ||||| || || || | |||||||| || | Sbjct 898354 CCTTTACATTTTCGATCGTATCCGACGCCTCCACCTCCAGTGTTATAGTTTTGCCAGTAA 898413 Query 101448 AAGTTTTTACAAATATCTGCATG 101470 ||||| ||||| ||||||||| Sbjct 898414 GTGTTTTAACAAAAATCTGCATG 898436 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | ||||||||||| || || || || |||||||| || ||||| Sbjct 899052 TACCGGCAAAGATTAGTCGCTGTTGATCTGGTGGGATCCCCTCTTTATCCTGGATTTTCG 899111 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || ||| | || | |||||||| | |||||| || || || | ||||| || || | Sbjct 899112 CCTTAACATTCTCGATCGTGTCAGATGCTTCCACCTCCAGTGTAATAGTTTTACCAGTAA 899171 Query 101448 AAGTTTTTACAAATATCTGCATG 101470 |||||| || || ||||||||| Sbjct 899172 GAGTTTTAACGAAAATCTGCATG 899194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396250561937748