Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq86 190 1e-42 seq438 98.7 6e-15 seq21 96.9 2e-14 seq2 96.9 2e-14 >seq86 Length=232636 Score = 190 bits (210), Expect = 1e-42 Identities = 268/372 (72%), Gaps = 11/372 (3%) Strand=Plus/Minus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| ||||| || || ||||||||||||| |||||||| | || ||||| ||| Sbjct 53300 ATTTCAGATGCGAAGCGACTGATTGGTCGTAAGTTTGATGACGGGTCAGTGCAATCAGAT 53241 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAGAAGC- 474627 ||| || ||||| ||||| || | |||| ||||||| |||||| | | | | Sbjct 53240 ATGAAACACTGGCCATTTAAAGTAGTGAATGCTGGTGGTGGTAAACCAAAAGTGCAGGTT 53181 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 |||||| | || || || ||| || |||| ||| ||||||| || |||||||| | Sbjct 53180 GAATACAAG--GGAGAGACGAAAACCTTCACACCAGAAGAAATTTCGTCGATGGTTTTGG 53123 Query 474687 CCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 ||||||||| | || || |||| | ||| || || | || | ||||| || || Sbjct 53122 TCAAAATGAAGGAGACGGCTGAAGCT--TTTCTGGGTCATGCGGTGAAAGATGCTGTTAT 53065 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 || || || || || ||||| || || ||||| ||||||||||||||| | || ||| Sbjct 53064 CACAGTCCCCGCCTACTTTAACGACTCACAACGACAAGCAACTAAAGATTCTGGTGCAAT 53005 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| ||||| || || | |||||||| || ||||||||||| || || |||||||||| Sbjct 53004 TGCTGGTCTAAACGTCCTTCGTATTATCAACGAACCAACAGCTGCTGCTATTGCTTATGG 52945 Query 474865 TCTTGATAAGAA 474876 | | || ||||| Sbjct 52944 TTTGGACAAGAA 52933 Score = 96.9 bits (106), Expect = 2e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||| | || || |||||||||||||| || |||||||||||||| Sbjct 51574 GGAATTCCACCTGCTCCTCGTGGTGTGCCTCAAATTGAAGTCACATTTGATATTGATGCG 51515 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209 || ||||| || |||||| |||| |||||||| | ||| || || ||||| Sbjct 51514 AACGGTATCCTGAATGTTTCTGCACAGGATAAATCCACAGGCAAACAAAACAAGATAACA 51455 Query 476210 ATTACAAA 476217 |||||||| Sbjct 51454 ATTACAAA 51447 >seq438 Length=48607 Score = 98.7 bits (108), Expect = 6e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 321759 GTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGTAAACCAACTTCATTC 321818 ||||||||||| ||||| | ||||| ||||||| | |||| ||||||| || Sbjct 35597 GTAACAATTTCTGGGAATGTCATATTTTGTGCAATAGTACGAGGTACACCAACTGTATCT 35538 Query 321819 A-GTGCAATATTTGGATCAGATGTGATAACTGTACGACCAGACATATCAACACGTTTACC 321877 | | |||| |||||||| | ||| || || || ||| | || | ||| || |||||||| Sbjct 35537 ATGGGCAAG-TTTGGATCTGGTGTAATCACAGTTCGAGCTGAGAAATCCACTCGTTTACC 35479 Query 321878 CATAAGATTTCCTCTAATACGACCTTCTTTTCC 321910 ||| | ||||||||| || || ||||||||||| Sbjct 35478 CATCAAATTTCCTCTGATTCGGCCTTCTTTTCC 35446 >seq21 Length=496054 Score = 96.9 bits (106), Expect = 2e-14 Identities = 170/248 (69%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 474355 TTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGG 474414 |||||| ||||| | |||| ||| ||| ||| ||||| ||||||||||| ||||| Sbjct 297922 TTACAGCTGTGTCGGCGTTTATAAAAGTGGACGAGTGGAAATCATTGCCAATGAACAAGG 297863 Query 474415 TAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTG------AACATCTTATTGG 474468 |||| ||| || || || || || | || |||| || | | ||||||||| Sbjct 297862 TAATCGAATTACGCCTTCGTACGTGGCATTCACTGGTGATGGTGGTGAGCGTCTTATTGG 297803 Query 474469 AGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAG 474528 |||||||||||| | || || | ||||| |||||| | ||||||| ||| | Sbjct 297802 TGATGCTGCTAAAAACCAGTTAACAACAAATCCGAAAAATACTGTCTTTGATGTTAAGCG 297743 Query 474529 ATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTT 474588 |||||||||| | | | | ||| | ||||| || ||||| || |||||||| Sbjct 297742 TCTGATTGGTCGAGAATATAAGGATCCGACTGTACAGCAAGATATTAAACACTGGCCTTT 297683 Query 474589 TAAGGTGA 474596 || |||| Sbjct 297682 CAATGTGA 297675 >seq2 Length=1259180 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || ||||| || || || || || || ||||| | || || Sbjct 897866 ACGAAGACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGT 897925 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || |||||||||||||| || || | || ||||| || ||||| || Sbjct 897926 ACGACCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCC 897985 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||| || ||| ||||||| || |||||||| | | | | || ||| Sbjct 897986 TTCCTTGTCTTGGATTTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTACTTCCAA 898045 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || | ||| || ||||||||||| Sbjct 898046 -AGTTATGGTCTTACCCGTCAAAGTTTTTACGAAAATTTG 898084 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| || |||||||| || || || || |||||||| ||||| || ||| | Sbjct 899425 CCAGCAAAAATCAGGCGTTGTTGGTCTGGCGGGATACCTTCCTTATCTTGTATTTTTGCT 899484 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 |||||| |||||| || || | | | | |||||| ||||| || || || || | Sbjct 899485 TTGACATTTTCAATCGTGTCTGAAGCCTCCA-CTTCAAGAGTAATCGTCTTCCCAGTTAA 899543 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||| ||||||||||| Sbjct 899544 TGTCTTCACGAAAATTTG 899561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267931954073072