Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq86 215 7e-51 seq2 168 9e-37 seq13 127 3e-24 seq21 116 5e-21 >seq86 Length=232636 Score = 215 bits (238), Expect = 7e-51 Identities = 265/362 (73%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 195488 GACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAG 195547 || |||||||| || |||||||| |||||| || | ||| ||| ||||| || Sbjct 53294 GATGCGAAGCGACTGATTGGTCGTAAGTTTGATGACGGGTCAGTGCAATCAGATATGAAA 53235 Query 195548 GACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTT 195607 ||||| | | | |||| || | || | || ||| || | | | ||||||| Sbjct 53234 CACTGGCCATTTAAAGTAGTGAATGCTGGTGGTGGTAAACCAAAAGTGCAGGTTGAATAC 53175 Query 195608 CACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATG 195667 | || |||| |||| || | || |||||||||||||| ||||| ||| | || ||| Sbjct 53174 AAGGGAGAGACGAAAACCTTCACACCAGAAGAAATTTCGTCGATGGTTTTGGTCAAAATG 53115 Query 195668 AAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCT 195727 |||||||| || ||| |||| ||||| | | ||||||||||| ||| | || || || Sbjct 53114 AAGGAGACGGCTGAAGCTTTTCTGGGTCATGCGGTGAAAGATGCTGTTATCACAGTCCCC 53055 Query 195728 GCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTA 195787 || ||||| | || ||||||||||| || || || || ||| ||| ||||| |||||| Sbjct 53054 GCCTACTTTAACGACTCACAACGACAAGCAACTAAAGATTCTGGTGCAATTGCTGGTCTA 52995 Query 195788 AACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAG 195847 ||| ||| | |||||||| ||||||||||| ||||| |||||||||||| |||||||| Sbjct 52994 AACGTCCTTCGTATTATCAACGAACCAACAGCTGCTGCTATTGCTTATGGTTTGGACAAG 52935 Query 195848 AA 195849 || Sbjct 52934 AA 52933 Score = 129 bits (142), Expect = 8e-25 Identities = 182/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 ||||||||||||||||||| || || ||||||||||| |||| |||||| ||||| || | Sbjct 52344 TTGAGATTGATTCGTTGTTCGAGGGGATTGACTTCTACACAAATATTACGCGTGCTCGCT 52285 Query 196191 TTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTC 196250 ||||||| | ||||| | || | ||||| || |||||| ||| | | | Sbjct 52284 TTGAAGAACTTTGTGCTGATCTTTTCCGCTCAACAATGGATCCGGTTGAAAAAGCATTAC 52225 Query 196251 GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 |||| || || |||||||| || | ||| |||| ||||| | ||||| || || || | Sbjct 52224 GTGATGCTAAAATGGATAAAGCTCAAGTTCATGATATTGTGTTAGTGGGTGGGTCGACAC 52165 Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370 |||| || || | || || | || || ||||| | |||||| || || |||| Sbjct 52164 GTATCCCAAAAGTGCAGAAGCTCCTGTCAGATTTCTTTTCTGGTAAAGAATTGAATAAAA 52105 Query 196371 CGATCAACCCGGATGA 196386 ||||| || ||||| Sbjct 52104 GCATCAATCCAGATGA 52089 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 |||||| | |||||||| || ||||||||||| |||||||| || | || | || || Sbjct 52840 AATGTACTTATCTTTGACCTTGGTGGTGGTACTTTTGATGTGTCTATCCTAACCATCGAG 52781 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTG 195977 | |||||| |||||||| ||| |||||||||| || |||||||| || |||| Sbjct 52780 GATGGTATTTTCGAAGTCAAGTCTACTGCTGGCGACACTCATCTTGGAGGTG 52729 Score = 93.3 bits (102), Expect = 6e-14 Identities = 186/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 196604 ATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTT 196662 ||||| || || ||||||||||| | | || | || || || || | ||||| | || Sbjct 51643 ATTCAGGTTTACGAAGGAGAACG-TGCTATGACCAAAGACAATAATTTGCTTGGTAAATT 51585 Query 196663 CGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGA 196722 ||| ||| | || |||||| |||| || | ||||| || || ||| | || || || Sbjct 51584 CGAGTTGTCTGGAATTCCACCTGCTCCTCGTGGTGTGCCTCAAATTGAAGTCACATTTGA 51525 Query 196723 TATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGA 196782 ||| || || || || || || || || | || |||| || | | |||||| | Sbjct 51524 TATTGATGCGAACGGTATCCTGAATGTTTCTGCACAGGATAAATCCACAGGCAAACAAAA 51465 Query 196783 AAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGT 196842 ||||| ||||| ||||| || ||||| | || ||||| || || || || ||||| Sbjct 51464 CAAGATAACAATTACAAATGATAAAGGGCGTTTGTCGAAGGATGAGATCGAGCGGATGGT 51405 Query 196843 TCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 || || || || ||||||| | ||| || || Sbjct 51404 GCAGGAGGCCGAGAAGTACAAAGCAGATGATGA 51372 >seq2 Length=1259180 Score = 168 bits (186), Expect = 9e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || ||||| | || || || || || || | || || ||| | || Sbjct 898087 ATGCAAATTTTCGTAAAAACTTTGACGGGTAAGACCATAACTTTGGAAGTAGAGGCTTCG 898028 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || ||||||| || || ||||| ||||||||||||||||| |||||| Sbjct 898027 GATACTATCGAGAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATTCCACCGGATCAG 897968 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || |||| || |||||||| || ||||| || || || |||||| | | ||||||||| Sbjct 897967 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAGGACGGTCGTACCTTATCGGATTACAAC 897908 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||| |||||||| || || || || ||||| | ||||| |||||| Sbjct 897907 ATTCAGAAGGAGTCGACGCTGCATCTGGTTCTTCGTCTTCGTGGTGGT 897860 Score = 138 bits (152), Expect = 1e-27 Identities = 141/183 (77%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 171907 GAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGC 171966 || || ||| | || || || ||||| || |||| ||| || ||||| ||||||||| Sbjct 897008 GAAGTAGAGGCTTCGGATACTATCGAGAATGTCAAG--CAAAATCCAAGACAAGGAAGGC 896951 Query 171967 ATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACC 172026 |||||||| |||||||| |||| || |||||||| || ||||| || || || |||||| Sbjct 896950 ATTCCACCGGATCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAGGACGGTCGTACC 896891 Query 172027 CTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGT 172086 | | ||||||||| |||| |||||||| || || || || ||||| | ||||| ||| Sbjct 896890 TTATCGGATTACAACATTCAGAAGGAGTCGACGCTGCATCTGGTTCTTCGTCTTCGTGGT 896831 Query 172087 GGT 172089 ||| Sbjct 896830 GGT 896828 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||||| |||||||| || | || || ||||| |||||| | || || ||| | | Sbjct 898808 GTATGCAAATTTTTGTGAAGACGTTAACGGGCAAAACAATCACCTTAGAAGTGGAGGCTT 898749 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||||||||| || | || ||||||||||| ||||| ||||| ||||| || |||| Sbjct 898748 CTGACACAATCGAAAATGTAAAGGCCAAGATTCAGGATAAAGAAGGAATTCCGCCTGATC 898689 Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003 |||| || |||||||| ||||||| Sbjct 898688 AGCAGCGTCTTATTTTCGCTGGTA 898665 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || ||||| || | ||||| || || || || || || || ||| | ||| Sbjct 899564 ATGCAAATTTTCGTGAAGACATTAACTGGGAAGACGATTACTCTTGAAGTGGAGGCTTCA 899505 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || ||||||| || || |||||||||||||| || || || || || Sbjct 899504 GACACGATTGAAAATGTCAAAGCAAAAATACAAGATAAGGAAGGTATCCCGCCAGACCAA 899445 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 899444 CAACGCCTGATTTTTGCTGGTA 899423 >seq13 Length=582103 Score = 127 bits (140), Expect = 3e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || | || |||||||| |||||||| ||||| || ||||| Sbjct 196454 ATGCAGATATTCGTGAAGACATTAACAGGAAAAACGATCACCCTTGAGGTAGAATCGTCT 196513 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | ||||| || ||||| ||||| ||||||||||| || || || Sbjct 196514 GACACTATTGAGAATGTGAAAGCTAAAATTCAGGATAAAGAAGGCATTCCGCCTGACCAA 196573 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || |||||||||||||| ||||| Sbjct 196574 CAGCGACTTATTTTTGCAGGTAA 196596 >seq21 Length=496054 Score = 116 bits (128), Expect = 5e-21 Identities = 167/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 195616 GAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGAC 195675 ||| |||| || || || ||||| ||||| | ||||| | || |||||||| | Sbjct 297538 GAAAAAACC-TTCGCCCCTGAAGAGATTTCAGCAATGGTACTCGGCAAAATGAAGGAAAT 297480 Query 195676 TGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTT 195735 ||||||| | | | || || | ||| || ||||||| || || ||||| |||||||| Sbjct 297479 TGCGGAAGCATATCTAGGAAAGAAAGTGGAACATGCAGTGGTCACGGTACCCGCTTACTT 297420 Query 195736 CAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCT 195795 | |||| |||| || || || || || || || | | ||||||| || || || | | Sbjct 297419 TAATGATGCACAGCGTCAAGCTACCAAAGATGCAGGTACTATTGCTGGCCTCAATGTTGT 297360 Query 195796 TAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 | || ||||||||||| || || ||||| || |||||||| |||| ||||| Sbjct 297359 CCGCATCATCAATGAACCTACGGCTGCTGCTATCGCTTATGGGTTGGATAAGAA 297306 Score = 105 bits (116), Expect = 9e-18 Identities = 125/163 (77%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 196605 TTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGG--AACTT 196661 |||| || |||||||||||||| || || |||| || |||||| | ||||| || || Sbjct 295850 TTCAGGTTTATGAAGGAGAACGA-CCAATGACAAAAGACAACCATAT-CTTGGGCAAGTT 295793 Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCG 196721 | ||||||||||| || ||| ||||||| ||||||| || ||||| | ||| || | Sbjct 295792 T-GATTTGACGGGTATCCCACCTGCACCGCGAGGTGTACCGCAGATCGAGGTTACGTTTG 295734 Query 196722 ATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAA 196764 | || || | ||||| |||||| |||||||||| ||||| || Sbjct 295733 AAATCGATGTGAATGGCATTCTACACGTCACAGCAGAGGATAA 295691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657815001014080