Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq67 95.1 2e-14 seq2 95.1 2e-14 seq13 93.3 6e-14 >seq67 Length=267328 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || ||||| ||||| || || |||||| | || |||||| || Sbjct 75190 ATGCAAATTTTCGTCAAGACATTAACTGGTAAGACGATTACACTTGAGGTCGAATCCTCG 75131 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||| || || || ||||| |||||||||||||| || Sbjct 75130 GATACAATTGAGAATGTAAAAGCTAAGATTCAGGACAAAGAGGGCATACCTCCAGATCAG 75071 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || ||||||||| ||| |||| Sbjct 75070 CAGCGATTGATTTTTGCAGGTA 75049 >seq2 Length=1259180 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || ||||| ||||| || || ||||| | ||||| || | | Sbjct 899567 AACATGCAAATTTTCGTGAAGACATTAACTGGGAAGACGATTACTCTTGAAGTGGAGGCT 899508 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||| || ||| |||||||||||||| ||||| || || ||||| Sbjct 899507 TCAGACACGATTGAAAATGTCAAAGCAAAAATACAAGATAAGGAAGGTATCCCGCCAGAC 899448 Query 155940 CAACAAAGATTGATTTATGCCGGTA 155964 |||||| | |||||| ||| |||| Sbjct 899447 CAACAACGCCTGATTTTTGCTGGTA 899423 >seq13 Length=582103 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| ||||| | || ||||| || |||||||| || || | || || ||| Sbjct 196451 AAGATGCAGATATTCGTGAAGACATTAACAGGAAAAACGATCACCCTTGAGGTAGAATCG 196510 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || |||||| |||||| || |||||||||||||| || || || Sbjct 196511 TCTGACACTATTGAGAATGTGAAAGCTAAAATTCAGGATAAAGAAGGCATTCCGCCTGAC 196570 Query 155940 CAACAAAGATTGATTTATGCCGGTAA 155965 ||||| || | |||| ||| ||||| Sbjct 196571 CAACAGCGACTTATTTTTGCAGGTAA 196596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731819268622400