Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq13 132 9e-26 seq2 109 1e-18 seq67 107 3e-18 >seq13 Length=582103 Score = 132 bits (146), Expect = 9e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| |||||||| | || |||||||||||| || || ||||||||||| || |||||| Sbjct 196596 TTACCTGCAAAAATAAGTCGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGAATTTTA 196537 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||| ||||| ||||| || ||||||||||| || || || || ||||| || ||| Sbjct 196536 GCTTTCACATTCTCAATAGTGTCAGACGATTCTACCTCAAGGGTGATCGTTTTTCCTGTT 196477 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 ||||| || | |||||||||||| || Sbjct 196476 AATGTCTTCACGAATATCTGCATCTT 196451 >seq2 Length=1259180 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||||| || || || ||||| |||||||||||||| Sbjct 899423 TACCAGCAAAAATCAGGCGTTGTTGGTCTGGCGGGATACCTTCCTTATCTTGTATTTTTG 899482 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || ||||| | || ||||| |||||||| || || ||||||| Sbjct 899483 CTTTGACATTTTCAATCGTGTCTGAAGCCTCCACTTCAAGAGTAATCGTCTTCCCAGTTA 899542 Query 172048 ATGTTTTAATGAATATCTGCATTTT 172072 |||| || | ||| || ||||| || Sbjct 899543 ATGTCTTCACGAAAATTTGCATGTT 899567 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| || ||||| | || ||| |||||||| || || ||||||||||| || ||||| Sbjct 898294 TACCTGCGAAAATGAGTCGCTGCTGGTCAGGAGGGATACCTTCTTTATCCTGGATTTTGG 898353 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||| || ||||| |||| || || || || || || ||||| ||||| | Sbjct 898354 CCTTTACATTTTCGATCGTATCCGACGCCTCCACCTCCAGTGTTATAGTTTTGCCAGTAA 898413 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 |||||||| || |||||||| Sbjct 898414 GTGTTTTAACAAAAATCTGCAT 898435 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| ||||| |||| || |||||| || ||||| || || |||||||| || ||||| Sbjct 899052 TACCGGCAAAGATTAGTCGCTGTTGATCTGGTGGGATCCCCTCTTTATCCTGGATTTTCG 899111 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 || ||||| || || || || | ||| || || || ||||| ||||||||||| | Sbjct 899112 CCTTAACATTCTCGATCGTGTCAGATGCTTCCACCTCCAGTGTAATAGTTTTACCAGTAA 899171 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| |||||||| Sbjct 899172 GAGTTTTAACGAAAATCTGCAT 899193 >seq67 Length=267328 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| |||| ||| || || || ||||| || ||||| || || || ||| Sbjct 75049 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTAG 75108 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| || ||||| || ||||| || || || ||||| || |||||||||| Sbjct 75109 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGTGTAATCGTCTTACCAGTTA 75168 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 |||| || | ||| || ||||| Sbjct 75169 ATGTCTTGACGAAAATTTGCAT 75190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905070784951200