Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 >seq2 Length=1259180 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| || ||||||| | | || | || ||||| |||||||| || || Sbjct 897896 CTCCTTCTGAATGTTGTAATCCGATAAGGTACGACCGTCCTCCAGCTGCTTTCCAGCAAA 897955 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||||| ||||| || | || | || |||||||| | |||||| |||||| | Sbjct 897956 GATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGATTTTTGCTTTGAC--A 898013 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || ||||| || || | ||||||||||| ||||| | || ||| Sbjct 898014 TTCTCGATAGTATCCGAAGCCTCTACTTCCAAAGTTATGGTCTTACCCGTCAAAGTTTTT 898073 Query 34964 ACAAAGATCTGCAT 34977 || || || ||||| Sbjct 898074 ACGAAAATTTGCAT 898087 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| || ||||||| | | || | || ||||| |||||||| || || Sbjct 896864 CTCCTTCTGAATGTTGTAATCCGATAAGGTACGACCGTCCTCCAGCTGCTTTCCAGCAAA 896923 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 |||||||| ||||| || | || | || |||||||| | ||||| Sbjct 896924 GATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGATTTT 896971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325669920487916