Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2 149 5e-31 seq13 91.5 1e-13 >seq2 Length=1259180 Score = 149 bits (164), Expect = 5e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| ||| ||||| || || || |||||||| ||||||| | ||| ||| Sbjct 897872 ACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGACC 897931 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || |||||| | |||| ||| ||||||||||| ||||| || || || Sbjct 897932 GTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTT 897991 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||| ||||||| | || | ||| || ||| |||||||| | |||||| Sbjct 897992 GTCTTGGATTTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTACTTCCAAAGTTAT 898051 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || ||||| || || || |||||| Sbjct 898052 GGTCTTACCCGTCAAAGTTTTTACGAAAATTTGCATT 898088 Score = 116 bits (128), Expect = 3e-21 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| ||| ||||| || || || |||||||| ||||||| | ||| ||| Sbjct 896840 ACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGACC 896899 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || |||||| | |||| ||| ||||||||||| ||||| || || || Sbjct 896900 GTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTT 896959 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 |||||| | ||||| |||||| | || | ||| || ||| |||||||| Sbjct 896960 GTCTTGGA--TTTTGCTTGACATTCTCGATAGTATCCGAAGCCTCTACTTC 897008 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | |||| | ||| || || ||||| ||||| || || ||||||| |||| | Sbjct 899425 CCAGCAAAAATCAGGCGTTGTTGGTCTGGCGGGATACCTTCCTTATCTTGTATTTTTGCT 899484 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 |||||| |||| | ||||| ||| || ||||||||||| || || || |||||||| Sbjct 899485 TTGACATTTTCAATCGTGTCTGAAGCCTCCACTTCAAGAGTAATCGTCTTCCCAGTTAAT 899544 Query 29767 GTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || Sbjct 899545 GTCTTCACGAAAATTTGCATGTT 899567 >seq13 Length=582103 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | || | || || || || |||||||| || ||||| || || |||||| Sbjct 196596 TTACCTGCAAAAATAAGTCGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTG-AATTTT 196538 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||| ||| | || | ||||||||| |||||| ||||| || || ||||| || || Sbjct 196537 AGCTTTCACATTCTCAATAGTGTCAGACGATTCTACCTCAAGGGTGATCGTTTTTCCTGT 196478 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || || || ||||||||||| || Sbjct 196477 TAATGTCTTCACGAATATCTGCATCTT 196451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385192138832724