Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq86 159 3e-33 seq21 109 4e-18 seq438 91.5 1e-12 >seq86 Length=232636 Score = 159 bits (176), Expect = 3e-33 Identities = 259/370 (70%), Gaps = 7/370 (2%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||||| |||| ||||||||| |||||||| || ||||| | | || Sbjct 52933 TTCTTGTCCAAACCATAAGCAATAGCAGCAGCTGTTGGTTCGTTGATAATACGAAGGACG 52992 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||||||| || | ||||||||| ||||||| |||||| |||||||| || Sbjct 52993 TTTAGACCAGCAATTGCACCAGAATCTTTAGTTGCTTGTCGTTGTGAGTCGTTAAAGTAG 53052 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || ||||| |||||| | || | | || | | |||| || || | Sbjct 53053 GCGGGGACTGTGATAACAGCATCTTTCACCGCATGACCCAGAAAAGCTTCAGCCGTCTCC 53112 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GAGAATATTGCTTGGATTCAT 282569 |||||||| |||| ||| || ||||||| ||||| | ||| || || | || Sbjct 53113 TTCATTTTGACCAAAACCATCGACGAAATTTCTTCTGGTGTGAAGGTT--TTCGTCTCTC 53170 Query 282570 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 282626 | ||| || | | | |||||| | |||| |||| | ||||||||||||| Sbjct 53171 CCTTGTATTCAACCTGCACTTTTGGTTTACCACCACCAGCATTCACTACTTTAAATGGCC 53230 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 | | ||||||||||||||| || ||||| ||| | | |||||| | ||| || | Sbjct 53231 AGTGTTTCATATCTGATTGCACTGACCCGTCATCAAACTTACGACCAATCAGTCGCTTCG 53290 Query 282687 CATCAAAAAT 282696 |||| |||| Sbjct 53291 CATCTGAAAT 53300 Score = 102 bits (112), Expect = 6e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 281377 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 281436 || ||| ||||| || || || || |||| ||| |||||||| |||| ||||| Sbjct 51443 ATCATTTGTAATTGTTATCTTGTTTTGTTTGCCTGTGGATTTATCCTGTGCAGAAACATT 51502 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 || ||||| || ||||| | |||||||||||||||||||||||| || || | |||| Sbjct 51503 CAGGATACCGTTCGCATCAATATCAAATGTGACTTCAATTTGAGGCACACCACGAGGAGC 51562 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 |||||| || || ||| | ||| | || || |||||| ||||| || | || Sbjct 51563 AGGTGGAATTCCAGACAACTCGAATTTACCAAGCAAATTATTGTCTTTGGTCATAGCACG 51622 Query 281557 TTCACCCTCGAAAA 281570 ||| || ||| ||| Sbjct 51623 TTCTCCTTCGTAAA 51636 Score = 91.5 bits (100), Expect = 1e-12 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 |||| ||| || |||||| | |||| |||||| |||||||||||| ||||| ||| | Sbjct 53406 AAAACAGTGTTATGTGGATTCATTGCAACTTGATTTTTGGCTGCATCACCAATGAGACGC 53465 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 || || || ||||||| ||||| ||||| ||||| || |||||| Sbjct 53466 TCAGTATCCGTAAATGCTACATACGATGGTGTTGTTCGGTTACCT 53510 >seq21 Length=496054 Score = 109 bits (120), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | ||||| || | ||||||||| || |||||||| || || | | |||| Sbjct 297306 TTCTTATCCAACCCATAAGCGATAGCAGCAGCCGTAGGTTCATTGATGATGCGGACAACA 297365 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| | ||||||||||| || ||||| | |||| ||| ||||| || Sbjct 297366 TTGAGGCCAGCAATAGTACCTGCATCTTTGGTAGCTTGACGCTGTGCATCATTAAAGTAA 297425 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || | || |||| | |||| ||||| | ||| || || ||| Sbjct 297426 GCGGGTACCGTGACCACTGCATGTTCCACTTTCTTTCCTAGATATGCTTCCGCAATTTCC 297485 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 282549 |||||||| | | | ||||| |||||| | ||| || Sbjct 297486 TTCATTTTGCCGAGTACCATTGCTGAAATCTCTTCAGG 297523 >seq438 Length=48607 Score = 91.5 bits (100), Expect = 1e-12 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342 ||| ||| |||||||| || || ||||||||||||||||| || || || ||| | || | Sbjct 35441 TGAAAGGAAAAGAAGGCCGAATCAGAGGAAATTTGATGGGTAAACGAGTGGATTTCTCAG 35500 Query 432343 CACGTACAGTTATTACTTCTGATCCTAATATTGCTC-TCAATGAAGTTGGTGTTCCTCTC 432401 | || || || ||||| | ||||| || |||| | | || ||||||||| |||| Sbjct 35501 CTCGAACTGTGATTACACCAGATCC-AAACTTGCCCATAGATACAGTTGGTGTACCTCGT 35559 Query 432402 ATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACA 432440 | |||||| ||||| | || || |||||||| ||| Sbjct 35560 ACTATTGCACAAAATATGACATTCCCAGAAATTGTTACA 35598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740347411958664