Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 176 9e-39 seq13 105 1e-17 seq67 100 6e-16 >seq2 Length=1259180 Score = 176 bits (194), Expect = 9e-39 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||||| || || || ||||| || || ||||| |||| | | ||| Sbjct 897872 ACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGACC 897931 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || |||||||||||||| ||||| || ||||| || || || |||||||| Sbjct 897932 GTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTT 897991 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || |||||||| ||||| || || ||||| || ||||||||||||||||| Sbjct 897992 GTCTTGGATTTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTACTTCCAAAGTTAT 898051 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| || ||||| || || |||||| Sbjct 898052 GGTCTTACCCGTCAAAGTTTTTACGAAAATTTGCATT 898088 Score = 122 bits (134), Expect = 2e-22 Identities = 133/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||||| || || || ||||| || || ||||| |||| | | ||| Sbjct 896840 ACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGACC 896899 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || |||||||||||||| ||||| || ||||| || || || |||||||| Sbjct 896900 GTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTT 896959 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAA 82768 ||||| || ||||| || ||||| || || ||||| || ||||||||||| Sbjct 896960 GTCTTGGAT-TTTGC-TTGACATTCTCGATAGTATCCGAAGCCTCTACTTCCAA 897011 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | |||||| ||||| || || |||||||||||||| || |||||| Sbjct 899425 CCAGCAAAAATCAGGCGTTGTTGGTCTGGCGGGATACCTTCCTTATCTTGTATTTTTGCT 899484 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||||||||| || || || ||||| | ||| |||||||| || || || Sbjct 899485 TTGACATTTTCAATCGTGTCTGAAGCCTCCACTTCAAGAGTAATCGTCTTCCCAGTTAAT 899544 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| Sbjct 899545 GTCTTCACGAAAATTTGCAT 899564 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| || || || | || ||||| || || |||||||| ||||| |||||||| || Sbjct 898667 CCAGCGAAAATAAGACGCTGCTGATCAGGCGGAATTCCTTCTTTATCCTGAATCTTGGCC 898726 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| || || ||| || || ||||| || || || || ||||| || ||| Sbjct 898727 TTTACATTTTCGATTGTGTCAGAAGCCTCCACTTCTAAGGTGATTGTTTTGCCCGTTAAC 898786 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| ||||| || ||||| Sbjct 898787 GTCTTCACAAAAATTTGCAT 898806 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || || || |||| || || || ||||| || ||||| ||||| || || || || Sbjct 898296 CCTGCGAAAATGAGTCGCTGCTGGTCAGGAGGGATACCTTCTTTATCCTGGATTTTGGCC 898355 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| |||||||| | || || |||| ||||| || ||||| || | Sbjct 898356 TTTACATTTTCGATCGTATCCGACGCCTCCACCTCCAGTGTTATAGTTTTGCCAGTAAGT 898415 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || ||||| |||||||| Sbjct 898416 GTTTTAACAAAAATCTGCAT 898435 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||||||||||| ||||||||||| || || || || ||||| || || || || Sbjct 899054 CCGGCAAAGATTAGTCGCTGTTGATCTGGTGGGATCCCCTCTTTATCCTGGATTTTCGCC 899113 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || ||||| ||| | ||| || |||| || || || || || || | Sbjct 899114 TTAACATTCTCGATCGTGTCAGATGCTTCCACCTCCAGTGTAATAGTTTTACCAGTAAGA 899173 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || |||||||| Sbjct 899174 GTTTTAACGAAAATCTGCAT 899193 >seq13 Length=582103 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||| || |||| ||||| || || || || ||||| ||||| ||||| || Sbjct 196596 TTACCTGCAAAAATAAGTCGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGAATTTTA 196537 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| ||||| || ||| | |||||| || | || ||||| || ||||| Sbjct 196536 GCTTTCACATTCTCAATAGTGTCAGACGATTCTACCTCAAGGGTGATCGTTTTTCCTGTT 196477 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||||||||| Sbjct 196476 AATGTCTTCACGAATATCTGCAT 196454 >seq67 Length=267328 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || | || || |||||||||||||| || || || || |||||||| ||| Sbjct 75051 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTAGCT 75110 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| ||||| ||||| | ||| || || | || |||||||| || || || Sbjct 75111 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGTGTAATCGTCTTACCAGTTAAT 75170 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| Sbjct 75171 GTCTTGACGAAAATTTGCAT 75190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981754690833996