Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 156 1e-32 seq86 152 2e-31 seq21 143 8e-29 seq13 123 8e-23 seq67 122 3e-22 seq6 116 1e-20 >seq2 Length=1259180 Score = 156 bits (172), Expect = 1e-32 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | ||||| ||||| || || ||||| || ||||| || ||||| || Sbjct 897860 ACCACCACGAAGACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGA 897919 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 ||| || || || || || || || |||||||||||||| || | |||||||| || || Sbjct 897920 TAAGGTACGACCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGG 897979 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| ||||| || || || ||||| ||||| ||||| || || | ||| || | || || Sbjct 897980 AATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTAC 898039 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||| | || | ||||| || || | |||||||| ||||| |||||| Sbjct 898040 TTCCAAAGTTATGGTCTTACCCGTCAAAGTTTTTACGAAAATTTGCATT 898088 Score = 122 bits (134), Expect = 3e-22 Identities = 142/188 (76%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | ||||| ||||| || || ||||| || ||||| || ||||| || Sbjct 896828 ACCACCACGAAGACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGA 896887 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 ||| || || || || || || || |||||||||||||| || | |||||||| || || Sbjct 896888 TAAGGTACGACCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGG 896947 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| ||||| || || || ||||| || || ||||| || || | ||| || | || || Sbjct 896948 AATGCCTTCCTTGTCTTGGATTTT-GC-TTGACATTCTCGATAGTATCCGAAGCCTCTAC 897005 Query 140690 TT-CAAGT 140696 || ||||| Sbjct 897006 TTCCAAGT 897013 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || || || || || ||||| |||||||| || |||||||||||||| ||||| || Sbjct 898296 CCTGCGAAAATGAGTCGCTGCTGGTCAGGAGGGATACCTTCTTTATCCTGGATTTTGGCC 898355 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || |||| ||| || | || || || ||||| | || || || || ||| Sbjct 898356 TTTACATTTTCGATCGTATCCGACGCCTCCACCTCCAGTGTTATAGTTTTGCCAGTAAGT 898415 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| |||||||||||||| Sbjct 898416 GTTTTAACAAAAATCTGCAT 898435 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| || || ||||| ||||||||||| ||||||||||||||||||||||| || || Sbjct 898667 CCAGCGAAAATAAGACGCTGCTGATCAGGCGGAATTCCTTCTTTATCCTGAATCTTGGCC 898726 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | ||||| | || ||||| | || | ||| || || |||| Sbjct 898727 TTTACATTTTCGATTGTGTCAGAAGCCTCCACTTCTAAGGTGATTGTTTTGCCCGTTAAC 898786 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || |||||||| ||||| Sbjct 898787 GTCTTCACAAAAATTTGCAT 898806 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||||||||| || || ||||| || || || || ||||||||||| ||||| || Sbjct 899054 CCGGCAAAGATTAGTCGCTGTTGATCTGGTGGGATCCCCTCTTTATCCTGGATTTTCGCC 899113 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || |||| ||||||| ||| || || ||||||| || || || || || Sbjct 899114 TTAACATTCTCGATCGTGTCAGATGCTTCCACCTCCAGTGTAATAGTTTTACCAGTAAGA 899173 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||||||||| Sbjct 899174 GTTTTAACGAAAATCTGCAT 899193 Score = 87.8 bits (96), Expect = 5e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || |||||||| || || ||||| | |||||| ||||| || || |||| Sbjct 898081 TTTGCATTCCTCCGCGTAATCTGAGCACCAGATGCAAAGTAGATTCTTTCTGGATGTTAT 898140 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 | || || | ||| || |||||||| ||||||||||| |||| Sbjct 898141 AGTCCGAAAGTGTGCGACCATCTTCCAGTTGTTTTCCTACAAA 898183 >seq86 Length=232636 Score = 152 bits (168), Expect = 2e-31 Identities = 246/351 (70%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 349388 GATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAA 349447 ||||| |||||||| |||||| | | ||| |||| || ||||| ||| | ||| Sbjct 53294 GATGCGAAGCGACTGATTGGTCGTAAGTTTGATGACGGGTCAGTGCAATCAGATATGAAA 53235 Query 349448 CATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATAT 349507 || | || |||| || || | |||| |||||||| | |||||||||| Sbjct 53234 CACTGGCCATTTAAAGTAGTGAATGCTGGTGGTGGTAAACCAAAAGTGCAGGTTGAATAC 53175 Query 349508 AAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAAT 349566 || || || || ||||| || ||| ||||||||||| || |||||||| || ||||| Sbjct 53174 AAGGGAGAGACGAAAACC-TTCACACCAGAAGAAATTTCGTCGATGGTTTTGGTCAAAAT 53116 Query 349567 GAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACC 349626 |||||| | |||||||| | | | ||| | | || | ||||||||||| || || || Sbjct 53115 GAAGGAGACGGCTGAAGCTTTTCTGGGTCATGCGGTGAAAGATGCTGTTATCACAGTCCC 53056 Query 349627 AGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTT 349686 ||||| ||||| || | || || ||||| |||||| |||| ||||| || | Sbjct 53055 CGCCTACTTTAACGACTCACAACGACAAGCAACTAAAGATTCTGGTGCAATTGCTGGTCT 52996 Query 349687 AAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || || | || || || ||||| || ||||| || ||||| ||||| Sbjct 52995 AAACGTCCTTCGTATTATCAACGAACCAACAGCTGCTGCTATTGCTTATGG 52945 Score = 140 bits (154), Expect = 1e-27 Identities = 188/259 (73%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 350029 TATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTC 350087 |||||| |||||||| ||| | || || | || |||| || |||||| ||||||| Sbjct 52346 TATTGAGATTGATTCG-TTGTTCGAGGGGATTGACTTCTACACAAATATTACGCGTGCTC 52288 Query 350088 GGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 | ||||||||| | ||| |||||||| | ||||||||||||| || ||||||| || Sbjct 52287 GCTTTGAAGAACTTTGTGCTGATCTTTTCCGCTCAACAATGGATCCGGTTGAAAAAGCAT 52228 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 || ||||| |||||| ||| ||| || |||| | || ||||| ||||| || | Sbjct 52227 TACGTGATGCTAAAATGGATAAAGCTCAAGTTCATGATATTGTGTTAGTGGGTGGGTCGA 52168 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 ||||||| |||||||| || || | || || || || ||| ||| |||||| || Sbjct 52167 CACGTATCCCAAAAGTGCAGAAGCTCCTGTCAGATTTCTTTTCTGGTAAAGAATTGAATA 52108 Query 350268 GATCAATTAATCCAGATGA 350286 | || ||||||||||| Sbjct 52107 AAAGCATCAATCCAGATGA 52089 Score = 91.5 bits (100), Expect = 4e-13 Identities = 186/276 (67%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 182789 TTCCTCATCTTCTTTAGCATACTTTTCAGCATCCATTGTCATTCTTTCTATTTCATCTTT 182848 ||| |||||| |||| ||||| || || ||| ||| | || || ||||| || Sbjct 51371 TTCATCATCTGCTTTG---TACTTCTCGGCCTCCTGCACCATCCGCTCGATCTCATCCTT 51427 Query 182849 AGAAAGATGACCTGCATCATTTGTAATTACTACATTACTAGTTACTCCAGTTGATTTTTC 182908 || | | | ||| ||||||||||||| || || | | || || ||||| || Sbjct 51428 CGACAAACGCCCTTTATCATTTGTAATTGTTATCTTGTTTTGTTTGCCTGTGGATTTATC 51487 Query 182909 AAGTGCGCTAACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGG 182968 |||| |||||| | ||||| || | |||| |||||||| |||||||| || || Sbjct 51488 CTGTGCAGAAACATTCAGGATACCGTTCGCATCAATATCAAATGTGACTTCAATTTGAGG 51547 Query 182969 AACACCTCGTGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATC 183028 ||||| || || ||||||||||||| || |||| ||| | |||||| || Sbjct 51548 CACACCACGAGGAGCAGGTGGAATTCCAGACAACTCGAATTTACCAAGCAAATTATTGTC 51607 Query 183029 TTTAGTTCTTGCTCTCTCGCCTTCATATACTTGAAT 183064 ||| || | || | || ||||| || || ||||| Sbjct 51608 TTTGGTCATAGCACGTTCTCCTTCGTAAACCTGAAT 51643 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 349766 AATATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 ||| | ||||| ||||| | |||||||||||||||||||| || | ||||| | || Sbjct 52840 AATGTACTTATCTTTGACCTTGGTGGTGGTACTTTTGATGTGTCTATCCTAACCATCGAG 52781 Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 || || ||||| ||||| || | |||||||| || || |||||||| || Sbjct 52780 GATGGTATTTTCGAAGTCAAGTCTACTGCTGGCGACACTCATCTTGGAGG 52731 >seq21 Length=496054 Score = 143 bits (158), Expect = 8e-29 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| |||||| ||||||| | | ||||||||||||||||| ||||||||| || Sbjct 297523 CCTGAAGAGATTTCAGCAATGGTACTCGGCAAAATGAAGGAAATTGCGGAAGCATATCTA 297464 Query 349592 GGTGAAACAGT--AACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGC 349649 || | | ||| ||| |||| || | || ||||| || || ||||||||||| |||| Sbjct 297463 GGAAAGAAAGTGGAAC--ATGCAGTGGTCACGGTACCCGCTTACTTTAATGATGCACAGC 297406 Query 349650 GTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATG 349709 || || || |||||||| || | ||||| || | |||||| | | || || |||| Sbjct 297405 GTCAAGCTACCAAAGATGCAGGTACTATTGCTGGCCTCAATGTTGTCCGCATCATCAATG 297346 Query 349710 AACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 |||| || ||||| || || || |||||| | ||||| Sbjct 297345 AACCTACGGCTGCTGCTATCGCTTATGGGTTGGATAA 297309 >seq13 Length=582103 Score = 123 bits (136), Expect = 8e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || ||||| || || || || || ||||| ||||| ||||||||||||||||||||| Sbjct 196596 TTACCTGCAAAAATAAGTCGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGAATTTTA 196537 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||||| ||||| ||||| | ||||| | ||| || ||||| || | || ||||| ||| Sbjct 196536 GCTTTCACATTCTCAATAGTGTCAGACGATTCTACCTCAAGGGTGATCGTTTTTCCTGTT 196477 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | ||| || || || |||||||| Sbjct 196476 AATGTCTTCACGAATATCTGCAT 196454 >seq67 Length=267328 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | || |||||||| ||||| || || ||||| |||||||| |||||| Sbjct 75051 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTAGCT 75110 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || | ||| || |||||||||| ||||| || |||| | Sbjct 75111 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGTGTAATCGTCTTACCAGTTAAT 75170 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || ||||| ||||| Sbjct 75171 GTCTTGACGAAAATTTGCAT 75190 >seq6 Length=901872 Score = 116 bits (128), Expect = 1e-20 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 130740 CCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCTTTCGCAATATCCCCGGGAGAT 130799 ||||| | ||| ||||||||||| || || |||||||||||||||| ||| || || | Sbjct 576965 CCTCCGATCATTACAAAATCAGCGCCAGCACCAAATGCTTTCGCAACATCTCCAGGGTTT 576906 Query 130800 TTACAACCCCCATCAGCAATAACATGTCCATTTAATCCATGTGCCGCATCAGCACACTCT 130859 | || || |||||| || ||||| ||||| | ||||||| || |||||||| || Sbjct 576905 GTGCACCCTCCATCACTCATCACATGCCCATTCAGGCCATGTGAAGCGTCAGCACATTCC 576846 Query 130860 GAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACTTTTCTTGTAGTACAAACAGCA 130919 | ||| | ||||||||| |||||||||||| || | ||| || ||||| | Sbjct 576845 AGCACAGCGCTCAATTGTGGATAACCAACTCCAGTTTTCTTCCGTGTCGTGCAAACTGAG 576786 Query 130920 CCTGGACCAATACC 130933 || ||||| || || Sbjct 576785 CCAGGACCTATGCC 576772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515142496568492