Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq67 116 4e-21 seq2 105 8e-18 seq13 100 3e-16 >seq67 Length=267328 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | || || ||||| ||||| |||||||| || || Sbjct 75190 ATGCAAATTTTCGTCAAGACATTAACTGGTAAGACGATTACACTTGAGGTCGAATCCTCG 75131 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || ||||| ||||||||||| ||||| || |||||||| ||| Sbjct 75130 GATACAATTGAGAATGTAAAAGCTAAGATTCAGGACAAAGAGGGCATACCTCCAGATCAG 75071 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | |||||||| |||| Sbjct 75070 CAGCGATTGATTTTTGCAGGTA 75049 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 |||||||| | || |||| ||||| || ||||||||||| ||||||||||||| || Sbjct 74667 GGTAAGCAGTTGGAAGATGGGCGTACTCTCTCAGACTATAATATCCAAAAGGAATCTACA 74608 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| ||| | |||||||| ||||| Sbjct 74607 CTTCATCTGGTCCTTCGTCTTCGTGGTGG 74579 >seq2 Length=1259180 Score = 105 bits (116), Expect = 8e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| |||||| | || ||||| || || || | || || ||| | | Sbjct 898806 ATGCAAATTTTTGTGAAGACGTTAACGGGCAAAACAATCACCTTAGAAGTGGAGGCTTCT 898747 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || |||||||| || || |||||||| || || ||| Sbjct 898746 GACACAATCGAAAATGTAAAGGCCAAGATTCAGGATAAAGAAGGAATTCCGCCTGATCAG 898687 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 |||||||| ||||| ||||||| ||| Sbjct 898686 CAGCGTCTTATTTTCGCTGGTATGCA 898661 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || ||||| ||||| ||||| || || ||||| ||| | Sbjct 898435 ATGCAGATTTTTGTTAAAACACTTACTGGCAAAACTATAACACTGGAGGTGGAGGCGTCG 898376 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| ||||| ||||| || || || || ||||| |||||| Sbjct 898375 GATACGATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAAGGTATCCCTCCTGACCAG 898316 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || ||||| || |||| Sbjct 898315 CAGCGACTCATTTTCGCAGGTA 898294 Score = 102 bits (112), Expect = 9e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 27397 ATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456 ||||| | |||||||| || || ||||| | || || ||||| ||||||||||| || Sbjct 899573 ATTACAAACATGCAAATTTTCGTGAAGACATTAACTGGGAAGACGATTACTCTTGAAGTG 899514 Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 ||| | || | |||| |||| | || || ||||| || || ||||| || || || Sbjct 899513 GAGGCTTCAGACACGATTGAAAATGTCAAAGCAAAAATACAAGATAAGGAAGGTATCCCG 899454 Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || || || ||||||||||||| Sbjct 899453 CCAGACCAACAACGCCTGATTTTTGCTGGTA 899423 >seq13 Length=582103 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || || || || || |||||||| || || | Sbjct 196454 ATGCAGATATTCGTGAAGACATTAACAGGAAAAACGATCACCCTTGAGGTAGAATCGTCT 196513 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| |||| |||||||||||||| || || || ||||| || ||||| Sbjct 196514 GACACTATTGAGAATGTGAAAGCTAAAATTCAGGATAAAGAAGGCATTCCGCCTGACCAA 196573 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 ||||| || |||||||| ||||| Sbjct 196574 CAGCGACTTATTTTTGCAGGTAA 196596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570269309135680