Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 seq13 86.0 5e-12 >seq2 Length=1259180 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||||||| |||| || ||| | || ||| | ||||| || | || Sbjct 898087 ATGCAAATTTTCGTAAAAACTTTGACGGGTAAGACCATAACTTTGGAAGTAGAGGCTTCG 898028 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| |||||| |||||| |||||||| |||||||| ||||| ||||| Sbjct 898027 GATACTATCGAGAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATTCCACCGGATCAG 897968 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || |||| ||| || ||| | || ||||||||| Sbjct 897967 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAGGACGGTCGTACCTTATCGGATTACAAC 897908 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||||||||| | ||| ||||| | ||| | || ||||| Sbjct 897907 ATTCAGAAGGAGTCGACGCTGCATCTGGTTCTTCGTCTTCGTGGTGG 897861 Score = 105 bits (116), Expect = 6e-18 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 27033 GAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGC 27092 ||||| || | || || | || |||| ||||| ||||| | |||||||| |||||| Sbjct 897008 GAAGTAGAGGCTTCGGATACTATCGAGAATGTCAAGCAAAA--TCCAAGACAAGGAAGGC 896951 Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152 || ||||| ||||| ||| | | || | || || || || |||| ||| || ||| Sbjct 896950 ATTCCACCGGATCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAGGACGGTCGTACC 896891 Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212 | || |||||||||||||| ||||||||||| | ||| ||||| | ||| | || ||| Sbjct 896890 TTATCGGATTACAACATTCAGAAGGAGTCGACGCTGCATCTGGTTCTTCGTCTTCGTGGT 896831 Query 27213 GG 27214 || Sbjct 896830 GG 896829 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||||| || || || ||||||| || || |||||| | || Sbjct 899194 CATGCAGATTTTCGTTAAAACTCTTACTGGTAAAACTATTACACTGGAGGTGGAAGCATC 899135 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || || ||||| || || ||||| || || ||||| ||||| Sbjct 899134 TGACACGATCGAGAATGTTAAGGCGAAAATCCAGGATAAAGAGGGGATCCCACCAGATCA 899075 Query 27107 ACAGCGTTTAATATACGCCGG 27127 |||||| |||| | ||||| Sbjct 899074 ACAGCGACTAATCTTTGCCGG 899054 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || | || || ||| | ||||||||||||||||| | || Sbjct 899565 CATGCAAATTTTCGTGAAGACATTAACTGGGAAGACGATTACTCTTGAAGTGGAGGCTTC 899506 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| | |||||| |||||| ||||| || ||||| || || || || || Sbjct 899505 AGACACGATTGAAAATGTCAAAGCAAAAATACAAGATAAGGAAGGTATCCCGCCAGACCA 899446 Query 27107 ACAGCG 27112 ||| || Sbjct 899445 ACAACG 899440 >seq13 Length=582103 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || | || || || | || || ||||| || ||| |||| Sbjct 196454 ATGCAGATATTCGTGAAGACATTAACAGGAAAAACGATCACCCTTGAGGTAGAATCGTCT 196513 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| |||||||| || ||||||||||| || || || ||| Sbjct 196514 GACACTATTGAGAATGTGAAAGCTAAAATTCAGGATAAAGAAGGCATTCCGCCTGACCAA 196573 Query 27108 CAGCG 27112 ||||| Sbjct 196574 CAGCG 196578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434887064129280