Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 140 8e-28 seq19 95.1 3e-14 seq4550 87.8 4e-12 seq769 87.8 4e-12 >seq2 Length=1259180 Score = 140 bits (154), Expect = 8e-28 Identities = 167/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || || || || || || | |||||||| | || || Sbjct 897866 ACGAAGACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGT 897925 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| |||| || || || || ||||| || Sbjct 897926 ACGACCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCC 897985 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||||||| |||||| || ||| ||||| || || || | || || || | Sbjct 897986 TTCCTTGTCTTGGAT-TTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTACTTCCA 898044 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | || || ||||| |||||||||||||||| ||| | ||||||| Sbjct 898045 AAGTTATGGTCTTACCCGTCAAAGTTTTTACGAAAATTTGCATT 898088 Score = 104 bits (114), Expect = 6e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| || || || ||||||||||| ||||| ||||||||||| ||||| || |||||| Sbjct 899425 CCAGCAAAAATCAGGCGTTGTTGGTCTGGCGGGATACCTTCCTTATCTTGTAT-TTTTGC 899483 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||| || |||||||| | ||||| || | || |||||||| || || || Sbjct 899484 TTTGACATTTTCAATCGTGTCTGAAGCCTCCACTTCAAGAGTAATCGTCTTCCCAGTTAA 899543 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 || || | ||| | |||||| || Sbjct 899544 TGTCTTCACGAAAATTTGCATGTT 899567 Score = 96.9 bits (106), Expect = 8e-15 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || || || || || || | |||||||| | || || Sbjct 896834 ACGAAGACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGT 896893 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| |||| || || || || ||||| || Sbjct 896894 ACGACCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCC 896953 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 |||||||||||||| |||||||| ||| ||||| || || || Sbjct 896954 TTCCTTGTCTTGGA--TTTTGCTTGACATTCTCGATAGTATCCGA 896996 >seq19 Length=499391 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||| || || || || ||||| |||||||||||||| |||||||| || Sbjct 21242 AAAATTTGTCCATCTGTGATTGAAATTACATTGGTAGGGATATAAGCGGAAACATCGCCG 21301 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| ||||| | ||| || | ||||| ||||| ||||| ||| Sbjct 21302 GCTTGAGTTTCAATAACTGGCAGTGCTGTCAGTGAGCCACCTCCA 21346 >seq4550 Length=735 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 7484 CTATATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTG 7543 || |||| ||||||||||| | || ||||| | ||| ||| | | |||| || Sbjct 589 CTGTATTGTCTATGATTATTCGTTTTGAATTGTCCAGTCCTGGTGGTTATTTATTTTTTG 530 Query 7544 GTAATAGCCAACTTTACAACGTTAT-TATTA-CGGCGCATGCCTTTGTTATGATTTTCTT 7601 ||| | | || |||| || || | ||||| | ||||| || | |||||||| || Sbjct 529 GTAGTGGTCAGGTTTATAA--TTCTGTATTAACTATGCATGGTGTTTTGATGATTTTTTT 472 Query 7602 TTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 | |||||||||| || |||| || ||||| || ||||| | | ||| | ||| | || Sbjct 471 TGTTGTTATGCCTATTTTGATTGGTGGTTTTGGTAATTGGATGTTGCCTATTATGTTAGG 412 Query 7662 TGCTCCTGATATGGCTTTTCC 7682 | ||||||| ||||||||||| Sbjct 411 TTCTCCTGAAATGGCTTTTCC 391 >seq769 Length=13655 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 7484 CTATATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTG 7543 || |||| ||||||||||| | || ||||| | ||| ||| | | |||| || Sbjct 8472 CTGTATTGTCTATGATTATTCGTTTTGAATTGTCCAGTCCTGGTGGTTATTTATTTTTTG 8413 Query 7544 GTAATAGCCAACTTTACAACGTTAT-TATTA-CGGCGCATGCCTTTGTTATGATTTTCTT 7601 ||| | | || |||| || || | ||||| | ||||| || | |||||||| || Sbjct 8412 GTAGTGGTCAGGTTTATAA--TTCTGTATTAACTATGCATGGTGTTTTGATGATTTTTTT 8355 Query 7602 TTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 | |||||||||| || |||| || ||||| || ||||| | | ||| | ||| | || Sbjct 8354 TGTTGTTATGCCTATTTTGATTGGTGGTTTTGGTAATTGGATGTTGCCTATTATGTTAGG 8295 Query 7662 TGCTCCTGATATGGCTTTTCC 7682 | ||||||| ||||||||||| Sbjct 8294 TTCTCCTGAAATGGCTTTTCC 8274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192443130080216