Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 172 1e-37 seq13 102 2e-16 seq67 100 6e-16 >seq2 Length=1259180 Score = 172 bits (190), Expect = 1e-37 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 282858 AAAATAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGG 282917 |||||| | | |||||||||| || ||||| |||||||| | ||| || || || Sbjct 897846 AAAATAGATCAGTAACCACCACGAAGACGAAGAACCAGATGCAGCGTCGACTCCTTCTGA 897905 Query 282918 ATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT 282977 |||||||| || | | || || || ||||| || || || || |||||||||| | Sbjct 897906 ATGTTGTAATCCGATAAGGTACGACCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTC 897965 Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 || || || ||||| || |||||||||||||| |||||||| || | |||||||| Sbjct 897966 TGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTCTCGATAGTA 898025 Query 283038 TCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 |||||||| || ||||| | ||| || ||||||||||||||||| || ||||| || ||| Sbjct 898026 TCCGAAGCCTCTACTTCCAAAGTTATGGTCTTACCCGTCAAAGTTTTTACGAAAATTTGC 898085 Query 283098 ATT 283100 ||| Sbjct 898086 ATT 898088 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| ||||||||||| ||| ||||| ||||| ||||| || |||||| Sbjct 899425 CCAGCAAAAATCAGGCGTTGTTGGTCTGGCGGGATACCTTCCTTATCTTGTATTTTTGCT 899484 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| ||||| || ||||| ||||| |||||||| || || || Sbjct 899485 TTGACATTTTCAATCGTGTCTGAAGCCTCCACTTCAAGAGTAATCGTCTTCCCAGTTAAT 899544 Query 283080 GTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| || ||||| || Sbjct 899545 GTCTTCACGAAAATTTGCATGTT 899567 Score = 114 bits (126), Expect = 3e-20 Identities = 145/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 282858 AAAATAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGG 282917 |||||| | | |||||||||| || ||||| |||||||| | ||| || || || Sbjct 896814 AAAATAGATCAGTAACCACCACGAAGACGAAGAACCAGATGCAGCGTCGACTCCTTCTGA 896873 Query 282918 ATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT 282977 |||||||| || | | || || || ||||| || || || || |||||||||| | Sbjct 896874 ATGTTGTAATCCGATAAGGTACGACCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTC 896933 Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 || || || ||||| || |||||||||||||| ||||| || || | |||||||| Sbjct 896934 TGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGAT-TTTGC-TTGACATTCTCGATAGTA 896991 Query 283038 TCCGAAGCTTCGACTTC 283054 |||||||| || ||||| Sbjct 896992 TCCGAAGCCTCTACTTC 897008 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||| | || ||||| || || || ||||| || || ||||| || || Sbjct 899054 CCGGCAAAGATTAGTCGCTGTTGATCTGGTGGGATCCCCTCTTTATCCTGGATTTTCGCC 899113 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| || ||||| || || || || || || ||||| || | | Sbjct 899114 TTAACATTCTCGATCGTGTCAGATGCTTCCACCTCCAGTGTAATAGTTTTACCAGTAAGA 899173 Query 283080 GTCTTAACGAATATCTGCAT 283099 || |||||||| |||||||| Sbjct 899174 GTTTTAACGAAAATCTGCAT 899193 >seq13 Length=582103 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| || | || ||||||||| |||||| || || || || || || || Sbjct 196596 TTACCTGCAAAAATAAGTCGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGAATTTTA 196537 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | || |||||||| || | ||| || || || |||||||| || || || Sbjct 196536 GCTTTCACATTCTCAATAGTGTCAGACGATTCTACCTCAAGGGTGATCGTTTTTCCTGTT 196477 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| |||||||||||||| || Sbjct 196476 AATGTCTTCACGAATATCTGCATCTT 196451 >seq67 Length=267328 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| ||||| || || || || || || ||||| ||||| || ||||| ||| Sbjct 75051 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTAGCT 75110 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || ||||| | |||||| || || || ||||||||||| || || Sbjct 75111 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGTGTAATCGTCTTACCAGTTAAT 75170 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 75171 GTCTTGACGAAAATTTGCAT 75190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046661897001656