Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 116 9e-21 seq13 113 1e-19 seq67 95.1 3e-14 >seq2 Length=1259180 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || || || || || || | || || || || || Sbjct 898084 CAAATTTTCGTAAAAACTTTGACGGGTAAGACCATAACTTTGGAAGTAGAGGCTTCGGAT 898025 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| ||| || || ||||| ||||| || || ||||| ||||| Sbjct 898024 ACTATCGAGAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATTCCACCGGATCAGCAG 897965 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || ||||| ||||| || || || | || | | ||||| ||| | Sbjct 897964 AGACTGATCTTTGCTGGAAAGCAGCTGGAGGACGGTCGTACCTTATCGGATTACAACATT 897905 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || |||||||| ||| Sbjct 897904 CAGAAGGAGTCGACGCTGCATCTGGTT 897878 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || | || || ||||| |||||| | || ||||| || ||| Sbjct 898803 CAAATTTTTGTGAAGACGTTAACGGGCAAAACAATCACCTTAGAAGTGGAGGCTTCTGAC 898744 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| ||||||||||| || || || ||||| Sbjct 898743 ACAATCGAAAATGTAAAGGCCAAGATTCAGGATAAAGAAGGAATTCCGCCTGATCAGCAG 898684 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| ||||| || Sbjct 898683 CGTCTTATTTTCGCTGG 898667 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | || || || ||||| || || || ||||| |||||| Sbjct 899561 CAAATTTTCGTGAAGACATTAACTGGGAAGACGATTACTCTTGAAGTGGAGGCTTCAGAC 899502 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||| || || || || ||||| ||||| || ||||| ||| Sbjct 899501 ACGATTGAAAATGTCAAAGCAAAAATACAAGATAAGGAAGGTATCCCGCCAGACCAACAA 899442 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 899441 CGCCTGATTTTTGCTGG 899425 >seq13 Length=582103 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | |||||||||||||||||||| ||||| ||| || ||| Sbjct 196457 CAGATATTCGTGAAGACATTAACAGGAAAAACGATCACCCTTGAGGTAGAATCGTCTGAC 196516 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || |||||||| |||||||| || || || ||||| || Sbjct 196517 ACTATTGAGAATGTGAAAGCTAAAATTCAGGATAAAGAAGGCATTCCGCCTGACCAACAG 196576 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||| || || || || Sbjct 196577 CGACTTATTTTTGCAGGTAA 196596 >seq67 Length=267328 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || ||||| || || ||||| ||| ||| || Sbjct 75187 CAAATTTTCGTCAAGACATTAACTGGTAAGACGATTACACTTGAGGTCGAATCCTCGGAT 75128 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||||||||||||||||| || || ||||| || ||||| Sbjct 75127 ACAATTGAGAATGTAAAAGCTAAGATTCAGGACAAAGAGGGCATACCTCCAGATCAGCAG 75068 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | || || || || Sbjct 75067 CGATTGATTTTTGCAGG 75051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203642302946216