Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq13041 89.7 1e-12 seq11261 89.7 1e-12 seq3562 89.7 1e-12 seq7706 87.8 4e-12 seq2796 87.8 4e-12 >seq13041 Length=5743 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 4519 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 4460 Query 165769 CCCC 165772 |||| Sbjct 4459 CCCC 4456 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 1960 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 2019 Query 165770 CCC 165772 ||| Sbjct 2020 CCC 2022 >seq11261 Length=6847 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 4247 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 4188 Query 165769 CCCC 165772 |||| Sbjct 4187 CCCC 4184 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 2068 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 2127 Query 165770 CCC 165772 ||| Sbjct 2128 CCC 2130 >seq3562 Length=19147 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 3061 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 3002 Query 165769 CCCC 165772 |||| Sbjct 3001 CCCC 2998 >seq7706 Length=10298 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 1271 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1330 Query 165770 CCC 165772 ||| Sbjct 1331 CCC 1333 >seq2796 Length=22113 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 5368 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 5427 Query 165770 CCC 165772 ||| Sbjct 5428 CCC 5430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057468955919480