Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq13211 89.7 5e-13
seq545 86.0 6e-12
seq6 86.0 6e-12
seq8748 84.2 2e-11
seq1949 84.2 2e-11
>seq13211
Length=5644
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333
|| |||||||||| ||| || || |||||||| || ||||||||||||||||||||
Sbjct 4699 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAGAATATACCCTCAACT 4640
Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393
| ||||||||| || | ||||| | | | ||| |||||| || | |||| |
Sbjct 4639 GCTGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 4580
Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATC 16422
|||| || ||||||| || ||| ||||
Sbjct 4579 GCCCAATCAGCTTTTTTCTTGATAAAATC 4551
>seq545
Length=42957
Score = 86.0 bits (94), Expect = 6e-12
Identities = 154/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257
|||||| || || || | ||| |||||||| |||| || | ||| || ||
Sbjct 28599 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 28540
Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317
| || ||||| | || |||||||||| ||| || || |||||||| || || ||
Sbjct 28539 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 28480
Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377
||||||||||||||| | |||||||| || | ||||| | | | ||| |||||| |
Sbjct 28479 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 28420
Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422
| | |||| | |||| || ||||||| || ||| ||||
Sbjct 28419 AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 28375
>seq6
Length=123133
Score = 86.0 bits (94), Expect = 6e-12
Identities = 135/192 (70%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320
||| ||||| || |||||||||| ||| || || |||||||| || || |||||
Sbjct 115820 CCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAA 115879
Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380
|||||||||||| | |||||||| || | ||||| | | | ||| |||||| ||
Sbjct 115880 TATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGC 115939
Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC---TATGGC 16437
| |||| | ||||||| ||||||| || ||| |||| | ||| ||| ||
Sbjct 115940 AGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAATCAA---ATTCAAATATAGC 115996
Query 16438 CTTAAACAATTT 16449
|||||||| ||
Sbjct 115997 ATTAAACAACTT 116008
>seq8748
Length=9037
Score = 84.2 bits (92), Expect = 2e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333
|| |||||||||| ||| || || |||||||| || || |||||||||||||||||
Sbjct 8589 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACT 8530
Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393
| |||||||| || | ||||| | | | ||| |||||| || | |||| |
Sbjct 8529 GCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 8470
Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449
|||| || ||||||| || ||| |||| | | ||| || |||||||| ||
Sbjct 8469 GCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAATATAGCATTAAACAACTT 8414
>seq1949
Length=26475
Score = 84.2 bits (92), Expect = 2e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333
|| |||||||||| ||| || || |||||||| || || |||||||||||||||||
Sbjct 11967 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACT 11908
Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393
| |||||||| || | ||||| | | | ||| |||||| || | |||| |
Sbjct 11907 GCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 11848
Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449
|||| || ||||||| || ||| |||| | | ||| || |||||||| ||
Sbjct 11847 GCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAATATAGCATTAAACAACTT 11792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511246937354720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |