Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq13211 89.7 5e-13 seq545 86.0 6e-12 seq6 86.0 6e-12 seq8748 84.2 2e-11 seq1949 84.2 2e-11 >seq13211 Length=5644 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| || || |||||||| || |||||||||||||||||||| Sbjct 4699 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAGAATATACCCTCAACT 4640 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | ||||||||| || | ||||| | | | ||| |||||| || | |||| | Sbjct 4639 GCTGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 4580 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATC 16422 |||| || ||||||| || ||| |||| Sbjct 4579 GCCCAATCAGCTTTTTTCTTGATAAAATC 4551 >seq545 Length=42957 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 |||||| || || || | ||| |||||||| |||| || | ||| || || Sbjct 28599 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 28540 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | || ||||| | || |||||||||| ||| || || |||||||| || || || Sbjct 28539 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 28480 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||||||||||||||| | |||||||| || | ||||| | | | ||| |||||| | Sbjct 28479 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 28420 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422 | | |||| | |||| || ||||||| || ||| |||| Sbjct 28419 AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 28375 >seq6 Length=123133 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 ||| ||||| || |||||||||| ||| || || |||||||| || || ||||| Sbjct 115820 CCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAA 115879 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 |||||||||||| | |||||||| || | ||||| | | | ||| |||||| || Sbjct 115880 TATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGC 115939 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC---TATGGC 16437 | |||| | ||||||| ||||||| || ||| |||| | ||| ||| || Sbjct 115940 AGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAATCAA---ATTCAAATATAGC 115996 Query 16438 CTTAAACAATTT 16449 |||||||| || Sbjct 115997 ATTAAACAACTT 116008 >seq8748 Length=9037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| || || |||||||| || || ||||||||||||||||| Sbjct 8589 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACT 8530 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | |||||||| || | ||||| | | | ||| |||||| || | |||| | Sbjct 8529 GCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 8470 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449 |||| || ||||||| || ||| |||| | | ||| || |||||||| || Sbjct 8469 GCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAATATAGCATTAAACAACTT 8414 >seq1949 Length=26475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| || || |||||||| || || ||||||||||||||||| Sbjct 11967 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACT 11908 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | |||||||| || | ||||| | | | ||| |||||| || | |||| | Sbjct 11907 GCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 11848 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449 |||| || ||||||| || ||| |||| | | ||| || |||||||| || Sbjct 11847 GCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAATATAGCATTAAACAACTT 11792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511246937354720