Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq2703 91.5 1e-13 seq1923 91.5 1e-13 seq11554 86.0 5e-12 seq7082 86.0 5e-12 >seq2703 Length=22513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127 || || || ||||| || || | ||| || | ||||| | || | || ||||| ||| Sbjct 10752 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 10811 Query 19128 GGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187 ||||||||| | || || || ||||||||| | || |||||||||||||| | | ||| Sbjct 10812 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCACATATTTATTCTACACAT 10871 Query 19188 ATAGATGCTTTAAAA 19202 |||| ||||||||| Sbjct 10872 TTAGAAGCTTTAAAA 10886 >seq1923 Length=26693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127 || || || ||||| || || | ||| || | ||||| | || | || ||||| ||| Sbjct 18578 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 18519 Query 19128 GGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187 ||||||||| | || || || ||||||||| | || |||||||||||||| | | ||| Sbjct 18518 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCACATATTTATTCTACACAT 18459 Query 19188 ATAGATGCTTTAAAA 19202 |||| ||||||||| Sbjct 18458 TTAGAAGCTTTAAAA 18444 >seq11554 Length=6653 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127 || || || ||||| || || | ||| || | ||||| | || | || ||||| ||| Sbjct 1561 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 1502 Query 19128 GGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187 ||||||||| | || || || ||||||||| | || ||||| |||||||| | | ||| Sbjct 1501 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 1442 Query 19188 ATAGATGCTTTAAAA 19202 |||| ||||||||| Sbjct 1441 TTAGAAGCTTTAAAA 1427 >seq7082 Length=11116 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127 || || || ||||| || || | ||| || | ||||| | || | || ||||| ||| Sbjct 6325 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 6384 Query 19128 GGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187 ||||||||| | || || || ||||||||| | || ||||| |||||||| | | ||| Sbjct 6385 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 6444 Query 19188 ATAGATGCTTTAAAA 19202 |||| ||||||||| Sbjct 6445 TTAGAGGCTTTAAAA 6459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399376452854820