Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq13211 100 3e-16
seq8748 96.9 4e-15
seq1949 96.9 4e-15
seq545 91.5 2e-13
seq6 91.5 2e-13
seq22364 87.8 2e-12
seq16268 84.2 2e-11
seq9317 84.2 2e-11
seq8967 84.2 2e-11
seq5419 84.2 2e-11
seq1038 84.2 2e-11
seq783 84.2 2e-11
>seq13211
Length=5644
Score = 100 bits (110), Expect = 3e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035
|||| | || || || ||||| || || |||| || | | ||| || | || || |
Sbjct 4558 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 4617
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
| || || | || || || || || ||||| | |||||||| || ||||| || || |
Sbjct 4618 AACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCAA 4677
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| |||||||| ||||||||||| | ||||| || ||||| || || || | || |
Sbjct 4678 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 4737
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| | || || || || ||| | || ||||| ||||| || ||| | ||||||
Sbjct 4738 CTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 4790
>seq8748
Length=9037
Score = 96.9 bits (106), Expect = 4e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035
|||| | || || || ||||| || || |||| || | | ||| || | || || |
Sbjct 8448 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 8507
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
| || || | || || || || || ||||| | ||||| || || ||||| || || |
Sbjct 8508 AACGTCTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 8567
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| |||||||| ||||||||||| | ||||| || ||||| || || || | || |
Sbjct 8568 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 8627
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| | || || || || ||| | || ||||| ||||| || ||| | ||||||
Sbjct 8628 CTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 8680
>seq1949
Length=26475
Score = 96.9 bits (106), Expect = 4e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035
|||| | || || || ||||| || || |||| || | | ||| || | || || |
Sbjct 11826 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 11885
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
| || || | || || || || || ||||| | ||||| || || ||||| || || |
Sbjct 11886 AACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 11945
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| |||||||| ||||||||||| | ||||| || ||||| || || || | || |
Sbjct 11946 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 12005
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| | || || || || ||| | || ||||| ||||| || ||| | ||||||
Sbjct 12006 CTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 12058
>seq545
Length=42957
Score = 91.5 bits (100), Expect = 2e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035
|||| | || || || ||||| || || |||| || | | ||| || | || || |
Sbjct 28382 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 28441
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
| || || | || || || || || ||||| | ||||| || || ||||| || || |
Sbjct 28442 AACGTCTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 28501
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| |||||||| ||||||||||| ||||| || ||||| || || || | || |
Sbjct 28502 TTTTTTGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTT 28561
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| | || || || || ||| | || ||||| ||| | || ||| ||||||||
Sbjct 28562 CTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTCTACTTTTCCAGCATTTG 28614
>seq6
Length=123133
Score = 91.5 bits (100), Expect = 2e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035
|||| | || || || ||||| || || |||| || | | ||| || | || || |
Sbjct 115974 TCAAGAAAAAAGCTGAATGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 115915
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
| || || | || || || | || ||||| | ||||| || || ||||| || || |
Sbjct 115914 AACGTCTCATTGCTTTTGCCACAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 115855
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| |||||||| ||||||||||| | ||||| || ||||| || || || | || |
Sbjct 115854 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGGCTGACACAAAGTAATGAATTAATTT 115795
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| | || || || || ||| | || ||||| ||||| || ||| | ||||||
Sbjct 115794 CTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 115742
>seq22364
Length=2645
Score = 87.8 bits (96), Expect = 2e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 2010 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 2069
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | || || ||||| |||||| |||| |||
Sbjct 2070 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 2129
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||| || ||||| |||| || | || || | |||||||||
Sbjct 2130 CAACGTCTAATCTTCGCAGGGAAACAATTGGAGGATGGTCGTACGTTGGCCGACTACAAT 2189
Query 40870 ATCCAG 40875
|| |||
Sbjct 2190 ATTCAG 2195
>seq16268
Length=4329
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 3359 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 3300
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | || || ||||| |||||| |||| |||
Sbjct 3299 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 3240
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||||| ||| || || || |||| || | || || | ||||||||
Sbjct 3239 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAAT 3180
Query 40870 ATCCAG 40875
|| |||
Sbjct 3179 ATTCAG 3174
>seq9317
Length=8507
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 762 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 821
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | || || ||||| |||||| |||| |||
Sbjct 822 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 881
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||||| ||| || || || |||| || | || || | ||||||||
Sbjct 882 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAAT 941
Query 40870 ATCCAG 40875
|| |||
Sbjct 942 ATTCAG 947
>seq8967
Length=8834
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 6700 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 6641
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | || || ||||| |||||| |||| |||
Sbjct 6640 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 6581
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||||| ||| || || || |||| || | || || | ||||||||
Sbjct 6580 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAAT 6521
Query 40870 ATCCAG 40875
|| |||
Sbjct 6520 ATTCAG 6515
>seq5419
Length=14078
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 13562 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 13621
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | || || ||||| |||||| |||| |||
Sbjct 13622 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 13681
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||||| ||| || || || |||| || | || || | ||||||||
Sbjct 13682 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAAT 13741
Query 40870 ATCCAG 40875
|| |||
Sbjct 13742 ATTCAG 13747
>seq1038
Length=34009
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 17304 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 17363
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | || || ||||| |||||| |||| |||
Sbjct 17364 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 17423
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||||| ||| || || || |||| || | || || | ||||||||
Sbjct 17424 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAAT 17483
Query 40870 ATCCAG 40875
|| |||
Sbjct 17484 ATTCAG 17489
>seq783
Length=38083
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 20926 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 20985
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | || || ||||| |||||| |||| |||
Sbjct 20986 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 21045
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||||| ||| || || ||| |||| || | || || | ||||||||
Sbjct 21046 CAACGTCTCATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGTACGTTGGCTGACTACAAT 21105
Query 40870 ATCCAG 40875
|| |||
Sbjct 21106 ATTCAG 21111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515050491472960
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