Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13211 100 3e-16 seq8748 96.9 4e-15 seq1949 96.9 4e-15 seq545 91.5 2e-13 seq6 91.5 2e-13 seq22364 87.8 2e-12 seq16268 84.2 2e-11 seq9317 84.2 2e-11 seq8967 84.2 2e-11 seq5419 84.2 2e-11 seq1038 84.2 2e-11 seq783 84.2 2e-11 >seq13211 Length=5644 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| | || || || ||||| || || |||| || | | ||| || | || || | Sbjct 4558 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 4617 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || | || || || || || ||||| | |||||||| || ||||| || || | Sbjct 4618 AACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCAA 4677 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | |||||||| ||||||||||| | ||||| || ||||| || || || | || | Sbjct 4678 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 4737 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || || || ||| | || ||||| ||||| || ||| | |||||| Sbjct 4738 CTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 4790 >seq8748 Length=9037 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| | || || || ||||| || || |||| || | | ||| || | || || | Sbjct 8448 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 8507 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || | || || || || || ||||| | ||||| || || ||||| || || | Sbjct 8508 AACGTCTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 8567 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | |||||||| ||||||||||| | ||||| || ||||| || || || | || | Sbjct 8568 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 8627 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || || || ||| | || ||||| ||||| || ||| | |||||| Sbjct 8628 CTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 8680 >seq1949 Length=26475 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| | || || || ||||| || || |||| || | | ||| || | || || | Sbjct 11826 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 11885 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || | || || || || || ||||| | ||||| || || ||||| || || | Sbjct 11886 AACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 11945 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | |||||||| ||||||||||| | ||||| || ||||| || || || | || | Sbjct 11946 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 12005 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || || || ||| | || ||||| ||||| || ||| | |||||| Sbjct 12006 CTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 12058 >seq545 Length=42957 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| | || || || ||||| || || |||| || | | ||| || | || || | Sbjct 28382 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 28441 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || | || || || || || ||||| | ||||| || || ||||| || || | Sbjct 28442 AACGTCTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 28501 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | |||||||| ||||||||||| ||||| || ||||| || || || | || | Sbjct 28502 TTTTTTGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTT 28561 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || || || ||| | || ||||| ||| | || ||| |||||||| Sbjct 28562 CTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTCTACTTTTCCAGCATTTG 28614 >seq6 Length=123133 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| | || || || ||||| || || |||| || | | ||| || | || || | Sbjct 115974 TCAAGAAAAAAGCTGAATGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 115915 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || | || || || | || ||||| | ||||| || || ||||| || || | Sbjct 115914 AACGTCTCATTGCTTTTGCCACAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 115855 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | |||||||| ||||||||||| | ||||| || ||||| || || || | || | Sbjct 115854 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGGCTGACACAAAGTAATGAATTAATTT 115795 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || || || ||| | || ||||| ||||| || ||| | |||||| Sbjct 115794 CTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 115742 >seq22364 Length=2645 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 2010 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 2069 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 2070 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 2129 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| || ||||| |||| || | || || | ||||||||| Sbjct 2130 CAACGTCTAATCTTCGCAGGGAAACAATTGGAGGATGGTCGTACGTTGGCCGACTACAAT 2189 Query 40870 ATCCAG 40875 || ||| Sbjct 2190 ATTCAG 2195 >seq16268 Length=4329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 3359 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 3300 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 3299 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 3240 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | |||||||| Sbjct 3239 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAAT 3180 Query 40870 ATCCAG 40875 || ||| Sbjct 3179 ATTCAG 3174 >seq9317 Length=8507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 762 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 821 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 822 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 881 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | |||||||| Sbjct 882 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAAT 941 Query 40870 ATCCAG 40875 || ||| Sbjct 942 ATTCAG 947 >seq8967 Length=8834 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 6700 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 6641 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 6640 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 6581 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | |||||||| Sbjct 6580 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAAT 6521 Query 40870 ATCCAG 40875 || ||| Sbjct 6520 ATTCAG 6515 >seq5419 Length=14078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 13562 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 13621 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 13622 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 13681 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | |||||||| Sbjct 13682 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAAT 13741 Query 40870 ATCCAG 40875 || ||| Sbjct 13742 ATTCAG 13747 >seq1038 Length=34009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 17304 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 17363 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 17364 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 17423 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | |||||||| Sbjct 17424 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAAT 17483 Query 40870 ATCCAG 40875 || ||| Sbjct 17484 ATTCAG 17489 >seq783 Length=38083 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 20926 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 20985 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| |||||| |||| ||| Sbjct 20986 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 21045 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || ||| |||| || | || || | |||||||| Sbjct 21046 CAACGTCTCATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGTACGTTGGCTGACTACAAT 21105 Query 40870 ATCCAG 40875 || ||| Sbjct 21106 ATTCAG 21111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515050491472960