Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq18229 98.7 1e-15 seq16001 98.7 1e-15 seq12421 98.7 1e-15 seq91 98.7 1e-15 >seq18229 Length=3682 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| ||| | ||| |||| || | Sbjct 1644 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 1703 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||||||||| ||||| || |||||||| Sbjct 1704 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAGGGTATCCCGCCTGATCA 1762 Query 124658 ACA 124660 ||| Sbjct 1763 ACA 1765 >seq16001 Length=4432 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| ||| | ||| |||| || | Sbjct 1953 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 2012 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||||||||| ||||| || |||||||| Sbjct 2013 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAGGGTATCCCGCCTGATCA 2071 Query 124658 ACA 124660 ||| Sbjct 2072 ACA 2074 >seq12421 Length=6087 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| ||| | ||| |||| || | Sbjct 970 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 1029 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||||||||| ||||| || |||||||| Sbjct 1030 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAGGGTATCCCGCCTGATCA 1088 Query 124658 ACA 124660 ||| Sbjct 1089 ACA 1091 >seq91 Length=67459 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| ||| | ||| |||| || | Sbjct 15069 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 15128 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||||||||| ||||| || |||||||| Sbjct 15129 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAGGGTATCCCGCCTGATCA 15187 Query 124658 ACA 124660 ||| Sbjct 15188 ACA 15190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755208625932800