Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13147 86.0 5e-12 seq11515 86.0 5e-12 seq856 86.0 5e-12 seq659 86.0 5e-12 seq18229 84.2 2e-11 seq16001 84.2 2e-11 seq12421 84.2 2e-11 seq91 84.2 2e-11 >seq13147 Length=5676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 ||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| | Sbjct 5227 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 5286 Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733 || || | |||||| || | || | |||||| || || ||||| || || || ||| Sbjct 5287 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 5346 Query 118734 TGCAT 118738 ||||| Sbjct 5347 TGCAT 5351 >seq11515 Length=6677 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 ||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| | Sbjct 4804 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 4745 Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733 || || | |||||| || | || | |||||| || || ||||| || || || ||| Sbjct 4744 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 4685 Query 118734 TGCAT 118738 ||||| Sbjct 4684 TGCAT 4680 >seq856 Length=36659 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 ||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| | Sbjct 4861 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 4802 Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733 || || | |||||| || | || | |||||| || || ||||| || || || ||| Sbjct 4801 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 4742 Query 118734 TGCAT 118738 ||||| Sbjct 4741 TGCAT 4737 >seq659 Length=40447 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 ||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| | Sbjct 38417 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGATG 38476 Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733 || || | |||||| || | || | |||||| || || ||||| || || || ||| Sbjct 38477 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 38536 Query 118734 TGCAT 118738 ||||| Sbjct 38537 TGCAT 38541 >seq18229 Length=3682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672 |||||| ||||| || || || ||||| || ||| ||||||| ||||| | || | Sbjct 1769 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 1710 Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732 ||| || | ||| ||||||| || | ||||| ||||| ||||| ||||||||||| Sbjct 1709 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 1650 Query 118733 CTGCAT 118738 |||||| Sbjct 1649 CTGCAT 1644 >seq16001 Length=4432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672 |||||| ||||| || || || ||||| || ||| ||||||| ||||| | || | Sbjct 2078 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 2019 Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732 ||| || | ||| ||||||| || | ||||| ||||| ||||| ||||||||||| Sbjct 2018 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 1959 Query 118733 CTGCAT 118738 |||||| Sbjct 1958 CTGCAT 1953 >seq12421 Length=6087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672 |||||| ||||| || || || ||||| || ||| ||||||| ||||| | || | Sbjct 1095 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 1036 Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732 ||| || | ||| ||||||| || | ||||| ||||| ||||| ||||||||||| Sbjct 1035 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 976 Query 118733 CTGCAT 118738 |||||| Sbjct 975 CTGCAT 970 >seq91 Length=67459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672 |||||| ||||| || || || ||||| || ||| ||||||| ||||| | || | Sbjct 15194 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 15135 Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732 ||| || | ||| ||||||| || | ||||| ||||| ||||| ||||||||||| Sbjct 15134 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 15075 Query 118733 CTGCAT 118738 |||||| Sbjct 15074 CTGCAT 15069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433691893679632