Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq13147 86.0 5e-12
seq11515 86.0 5e-12
seq856 86.0 5e-12
seq659 86.0 5e-12
seq18229 84.2 2e-11
seq16001 84.2 2e-11
seq12421 84.2 2e-11
seq91 84.2 2e-11
>seq13147
Length=5676
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673
||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| |
Sbjct 5227 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 5286
Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733
|| || | |||||| || | || | |||||| || || ||||| || || || |||
Sbjct 5287 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 5346
Query 118734 TGCAT 118738
|||||
Sbjct 5347 TGCAT 5351
>seq11515
Length=6677
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673
||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| |
Sbjct 4804 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 4745
Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733
|| || | |||||| || | || | |||||| || || ||||| || || || |||
Sbjct 4744 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 4685
Query 118734 TGCAT 118738
|||||
Sbjct 4684 TGCAT 4680
>seq856
Length=36659
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673
||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| |
Sbjct 4861 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 4802
Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733
|| || | |||||| || | || | |||||| || || ||||| || || || |||
Sbjct 4801 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 4742
Query 118734 TGCAT 118738
|||||
Sbjct 4741 TGCAT 4737
>seq659
Length=40447
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673
||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| |
Sbjct 38417 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGATG 38476
Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733
|| || | |||||| || | || | |||||| || || ||||| || || || |||
Sbjct 38477 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 38536
Query 118734 TGCAT 118738
|||||
Sbjct 38537 TGCAT 38541
>seq18229
Length=3682
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672
|||||| ||||| || || || ||||| || ||| ||||||| ||||| | || |
Sbjct 1769 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 1710
Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732
||| || | ||| ||||||| || | ||||| ||||| ||||| |||||||||||
Sbjct 1709 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 1650
Query 118733 CTGCAT 118738
||||||
Sbjct 1649 CTGCAT 1644
>seq16001
Length=4432
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672
|||||| ||||| || || || ||||| || ||| ||||||| ||||| | || |
Sbjct 2078 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 2019
Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732
||| || | ||| ||||||| || | ||||| ||||| ||||| |||||||||||
Sbjct 2018 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 1959
Query 118733 CTGCAT 118738
||||||
Sbjct 1958 CTGCAT 1953
>seq12421
Length=6087
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672
|||||| ||||| || || || ||||| || ||| ||||||| ||||| | || |
Sbjct 1095 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 1036
Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732
||| || | ||| ||||||| || | ||||| ||||| ||||| |||||||||||
Sbjct 1035 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 976
Query 118733 CTGCAT 118738
||||||
Sbjct 975 CTGCAT 970
>seq91
Length=67459
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672
|||||| ||||| || || || ||||| || ||| ||||||| ||||| | || |
Sbjct 15194 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 15135
Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732
||| || | ||| ||||||| || | ||||| ||||| ||||| |||||||||||
Sbjct 15134 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 15075
Query 118733 CTGCAT 118738
||||||
Sbjct 15074 CTGCAT 15069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433691893679632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |