Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq783 86.0 7e-12
seq5107 82.4 9e-11
seq2267 82.4 9e-11
>seq783
Length=38083
Score = 86.0 bits (94), Expect = 7e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058
||||||||||| ||||||| || || | || || | |||||| || ||||| |||||
Sbjct 21110 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 21051
Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118
|| ||||| || | || | | |||||| ||| ||| || |||| || | |
Sbjct 21050 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 20991
Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178
||||| | |||||||| | ||||| || || || || ||||| || ||||||| |
Sbjct 20990 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 20931
Query 43179 TGCAT 43183
|||||
Sbjct 20930 TGCAT 20926
>seq5107
Length=14694
Score = 82.4 bits (90), Expect = 9e-11
Identities = 129/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058
||||||||||| ||||||| || || | || || | ||||| || ||||| |||||
Sbjct 12798 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 12739
Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118
|| ||||| || | || | | |||||| ||| ||| || |||| || | |
Sbjct 12738 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 12679
Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178
||||| | |||||||| | ||||| || || || || ||||| || ||||||| |
Sbjct 12678 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 12619
Query 43179 TGCAT 43183
|||||
Sbjct 12618 TGCAT 12614
>seq2267
Length=24593
Score = 82.4 bits (90), Expect = 9e-11
Identities = 69/84 (82%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 60047 AACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAG 60106
|| ||||| |||||||| |||| | | ||||||||||||| |||||| | ||||||||
Sbjct 1680 AATGTTTA--AAAAATTTCCTCCCAGTCCGGGAATCGAACCCGGGTCTCGCACGTGACAG 1737
Query 60107 GCGGACATACTCACCACTATACTA 60130
||| ||||| ||||||||||||
Sbjct 1738 GCGCGGATACTAACCACTATACTA 1761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571630358326880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |