Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq783 86.0 7e-12 seq5107 82.4 9e-11 seq2267 82.4 9e-11 >seq783 Length=38083 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 ||||||||||| ||||||| || || | || || | |||||| || ||||| ||||| Sbjct 21110 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 21051 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118 || ||||| || | || | | |||||| ||| ||| || |||| || | | Sbjct 21050 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 20991 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 ||||| | |||||||| | ||||| || || || || ||||| || ||||||| | Sbjct 20990 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 20931 Query 43179 TGCAT 43183 ||||| Sbjct 20930 TGCAT 20926 >seq5107 Length=14694 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 ||||||||||| ||||||| || || | || || | ||||| || ||||| ||||| Sbjct 12798 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 12739 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118 || ||||| || | || | | |||||| ||| ||| || |||| || | | Sbjct 12738 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 12679 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 ||||| | |||||||| | ||||| || || || || ||||| || ||||||| | Sbjct 12678 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 12619 Query 43179 TGCAT 43183 ||||| Sbjct 12618 TGCAT 12614 >seq2267 Length=24593 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 60047 AACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAG 60106 || ||||| |||||||| |||| | | ||||||||||||| |||||| | |||||||| Sbjct 1680 AATGTTTA--AAAAATTTCCTCCCAGTCCGGGAATCGAACCCGGGTCTCGCACGTGACAG 1737 Query 60107 GCGGACATACTCACCACTATACTA 60130 ||| ||||| |||||||||||| Sbjct 1738 GCGCGGATACTAACCACTATACTA 1761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571630358326880