Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq8748 118 1e-21
seq13211 113 4e-20
seq1949 113 4e-20
seq6 113 4e-20
seq545 98.7 9e-16
>seq8748
Length=9037
Score = 118 bits (130), Expect = 1e-21
Identities = 285/438 (65%), Gaps = 39/438 (9%)
Strand=Plus/Minus
Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276
|| |||| || | || |||||||||||| | ||| | |||||| || | | |||||
Sbjct 8679 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 8620
Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336
|| || ||| || || ||||| | || ||||| || | |||||| || || |||
Sbjct 8619 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 8560
Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396
|| ||||| ||||||||||| |||||||||||||| |||| | || ||||| |
Sbjct 8559 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAAT 8500
Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456
| | |||||| | |||| |||||||| ||||||| || | | | |
Sbjct 8499 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCA 8440
Query 16457 ATGTTCTCTATTGCATTAAA--------------TAAATAAtttttttCTTT-------- 16494
| | ||| |||||||| |||| ||||||||| |
Sbjct 8439 AACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTTTAATCTGAAGAA 8380
Query 16495 ---------GCT-------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538
| | |||| |||||||||||| |||| | |||||||||||
Sbjct 8379 GGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTG 8320
Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598
|||||||||| || || || || ||||| |||||||| || | |||||| | |||||| |
Sbjct 8319 AATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAA 8260
Query 16599 CTTC-AGAGTAAAACCTT 16615
|||| ||| ||||| ||
Sbjct 8259 CTTCTTGAGCAAAACGTT 8242
>seq13211
Length=5644
Score = 113 bits (124), Expect = 4e-20
Identities = 287/444 (65%), Gaps = 46/444 (10%)
Strand=Plus/Minus
Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276
|| |||| || | || |||||||||||| | ||| | |||||| || | | |||||
Sbjct 4789 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4730
Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336
|| || ||| || || ||||| | || ||||| || | |||||| || || |||
Sbjct 4729 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4670
Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396
|| ||||||||||||||||| |||||||| ||||| |||| | || ||||| |
Sbjct 4669 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAAT 4610
Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456
| | |||||| | |||| |||||||| ||||||| || | | | ||
Sbjct 4609 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATA-AAATC 4551
Query 16457 ATGTTC-TCTATTGCATTAAAT----------------AAATAAtttttttCTTTGCT-- 16497
| ||| ||| ||||||||| ||| ||||| ||| ||| |
Sbjct 4550 AAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAATCT 4491
Query 16498 -------------------------ATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532
|||| |||||||||||| |||| | |||||
Sbjct 4490 AAAAAAGGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATACA 4431
Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592
|||||||||||||||| || || || || ||||| |||||||| || | ||| || | ||
Sbjct 4430 TTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTA 4371
Query 16593 TTTGTACTTC-AGAGTAAAACCTT 16615
|||| ||||| ||| ||||| ||
Sbjct 4370 TTTGAACTTCTTGAGCAAAACGTT 4347
>seq1949
Length=26475
Score = 113 bits (124), Expect = 4e-20
Identities = 284/438 (65%), Gaps = 39/438 (9%)
Strand=Plus/Minus
Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276
|| |||| || | || |||||||||||| | ||| | |||||| || | | |||||
Sbjct 12057 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 11998
Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336
|| || ||| || || ||||| | || ||||| || | |||||| || || |||
Sbjct 11997 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 11938
Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396
|| ||||| ||||||||||| |||||||||||||| |||| | || ||||| |
Sbjct 11937 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAAT 11878
Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456
| | |||||| | |||| |||||||| ||||||| || | | | |
Sbjct 11877 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCA 11818
Query 16457 ATGTTCTCTATTGCATTAAATAAAT---------------AAtttttttCTTT------- 16494
| | ||| |||||||| || | ||||||||| |
Sbjct 11817 AACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCTAAAGAA 11758
Query 16495 ---------GCT-------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538
| | |||| |||||||||||| |||| | |||||||||||
Sbjct 11757 GGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTG 11698
Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598
|||||||||| || || || || ||||| |||||||| || | |||||| | |||||| |
Sbjct 11697 AATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAA 11638
Query 16599 CTTC-AGAGTAAAACCTT 16615
|||| ||| ||||| ||
Sbjct 11637 CTTCTTGAGCAAAACGTT 11620
>seq6
Length=123133
Score = 113 bits (124), Expect = 4e-20
Identities = 276/423 (65%), Gaps = 38/423 (9%)
Strand=Plus/Plus
Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276
|| |||| || | || |||||||||||| | ||| | |||||| || | | |||||
Sbjct 115743 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 115802
Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336
|| || ||| || || ||||| | || ||||| || | |||||| || || |||
Sbjct 115803 TCATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 115862
Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396
|| ||||| ||||||||||| ||||||| |||||| |||| | || ||||| |
Sbjct 115863 AAACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAAT 115922
Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456
| | |||||| | |||| |||||| | ||||||| || | | | | |
Sbjct 115923 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAAT-C 115981
Query 16457 ATGTTCTC-TATTGCATTAAA--------------TAAATAAtttttttCTTT------- 16494
| ||| ||| |||||||| |||| |||||||| | |
Sbjct 115982 AAATTCAAATATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTAATCTAAAAAAG 116041
Query 16495 --------GCT-------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539
| | |||| |||||||||||| |||| | ||||||||||||
Sbjct 116042 GAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGA 116101
Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599
||||||||| || || || || ||||| |||||||| || | |||||| | |||||| ||
Sbjct 116102 ATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAAC 116161
Query 16600 TTC 16602
|||
Sbjct 116162 TTC 116164
Score = 84.2 bits (92), Expect = 2e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|| ||||||||| |||| |||||||||| || || || || ||||| | ||||| ||
Sbjct 115169 TTCTGATATTCAGAAACTTTCTTTTCAAAAAAGTTAGTCTTCCCTTCAATAGAAATGTTC 115228
Query 16004 TCCATAAAATCAAAAGGATTT 16024
|||||||||||||||||||||
Sbjct 115229 TCCATAAAATCAAAAGGATTT 115249
>seq545
Length=42957
Score = 98.7 bits (108), Expect = 9e-16
Identities = 276/431 (64%), Gaps = 47/431 (11%)
Strand=Plus/Minus
Query 16231 TATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGT 16290
|| |||||||||||| | ||| | |||||| || | | ||||| || || |||
Sbjct 28599 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 28540
Query 16291 AAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAA 16350
|| || ||||| || ||||| || | |||||| || || ||||| ||||| ||
Sbjct 28539 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 28480
Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttact 16410
||||||||| ||||| |||||||| |||| | || ||||| | | | ||||||
Sbjct 28479 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 28420
Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC-TATTG 16469
| |||| |||||||| ||||||| || | | | | || ||| ||| |
Sbjct 28419 AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAAT-CAAATTCGAATATAG 28361
Query 16470 CATTAAATAAAT-----------------AAtttttttCTTTGCT--------------- 16497
|||||||||| | ||| ||||| ||| |
Sbjct 28360 CATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAATTTAAAGAAGGAAATA 28301
Query 16498 ------------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAAT 16545
|||| |||||||||||| |||| | ||||||||||||||||||
Sbjct 28300 CCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAAT 28241
Query 16546 ATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AG 16604
||| || || || || ||||| |||||||| || | ||| || | |||||| ||||| |
Sbjct 28240 ATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTG 28181
Query 16605 AGTAAAACCTT 16615
|| ||||| ||
Sbjct 28180 AGCAAAACGTT 28170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462360550445600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |