Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq8748 118 1e-21 seq13211 113 4e-20 seq1949 113 4e-20 seq6 113 4e-20 seq545 98.7 9e-16 >seq8748 Length=9037 Score = 118 bits (130), Expect = 1e-21 Identities = 285/438 (65%), Gaps = 39/438 (9%) Strand=Plus/Minus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || |||| || | || |||||||||||| | ||| | |||||| || | | ||||| Sbjct 8679 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 8620 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| || || ||||| | || ||||| || | |||||| || || ||| Sbjct 8619 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 8560 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || ||||| ||||||||||| |||||||||||||| |||| | || ||||| | Sbjct 8559 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAAT 8500 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | |||||| | |||| |||||||| ||||||| || | | | | Sbjct 8499 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCA 8440 Query 16457 ATGTTCTCTATTGCATTAAA--------------TAAATAAtttttttCTTT-------- 16494 | | ||| |||||||| |||| ||||||||| | Sbjct 8439 AACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTTTAATCTGAAGAA 8380 Query 16495 ---------GCT-------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | |||| |||||||||||| |||| | ||||||||||| Sbjct 8379 GGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTG 8320 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||||||||| || || || || ||||| |||||||| || | |||||| | |||||| | Sbjct 8319 AATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAA 8260 Query 16599 CTTC-AGAGTAAAACCTT 16615 |||| ||| ||||| || Sbjct 8259 CTTCTTGAGCAAAACGTT 8242 >seq13211 Length=5644 Score = 113 bits (124), Expect = 4e-20 Identities = 287/444 (65%), Gaps = 46/444 (10%) Strand=Plus/Minus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || |||| || | || |||||||||||| | ||| | |||||| || | | ||||| Sbjct 4789 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4730 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| || || ||||| | || ||||| || | |||||| || || ||| Sbjct 4729 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4670 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || ||||||||||||||||| |||||||| ||||| |||| | || ||||| | Sbjct 4669 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAAT 4610 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | |||||| | |||| |||||||| ||||||| || | | | || Sbjct 4609 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATA-AAATC 4551 Query 16457 ATGTTC-TCTATTGCATTAAAT----------------AAATAAtttttttCTTTGCT-- 16497 | ||| ||| ||||||||| ||| ||||| ||| ||| | Sbjct 4550 AAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAATCT 4491 Query 16498 -------------------------ATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532 |||| |||||||||||| |||| | ||||| Sbjct 4490 AAAAAAGGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATACA 4431 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 |||||||||||||||| || || || || ||||| |||||||| || | ||| || | || Sbjct 4430 TTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTA 4371 Query 16593 TTTGTACTTC-AGAGTAAAACCTT 16615 |||| ||||| ||| ||||| || Sbjct 4370 TTTGAACTTCTTGAGCAAAACGTT 4347 >seq1949 Length=26475 Score = 113 bits (124), Expect = 4e-20 Identities = 284/438 (65%), Gaps = 39/438 (9%) Strand=Plus/Minus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || |||| || | || |||||||||||| | ||| | |||||| || | | ||||| Sbjct 12057 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 11998 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| || || ||||| | || ||||| || | |||||| || || ||| Sbjct 11997 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 11938 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || ||||| ||||||||||| |||||||||||||| |||| | || ||||| | Sbjct 11937 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAAT 11878 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | |||||| | |||| |||||||| ||||||| || | | | | Sbjct 11877 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCA 11818 Query 16457 ATGTTCTCTATTGCATTAAATAAAT---------------AAtttttttCTTT------- 16494 | | ||| |||||||| || | ||||||||| | Sbjct 11817 AACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCTAAAGAA 11758 Query 16495 ---------GCT-------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | |||| |||||||||||| |||| | ||||||||||| Sbjct 11757 GGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTG 11698 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||||||||| || || || || ||||| |||||||| || | |||||| | |||||| | Sbjct 11697 AATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAA 11638 Query 16599 CTTC-AGAGTAAAACCTT 16615 |||| ||| ||||| || Sbjct 11637 CTTCTTGAGCAAAACGTT 11620 >seq6 Length=123133 Score = 113 bits (124), Expect = 4e-20 Identities = 276/423 (65%), Gaps = 38/423 (9%) Strand=Plus/Plus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || |||| || | || |||||||||||| | ||| | |||||| || | | ||||| Sbjct 115743 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 115802 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| || || ||||| | || ||||| || | |||||| || || ||| Sbjct 115803 TCATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 115862 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || ||||| ||||||||||| ||||||| |||||| |||| | || ||||| | Sbjct 115863 AAACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAAT 115922 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | |||||| | |||| |||||| | ||||||| || | | | | | Sbjct 115923 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAAT-C 115981 Query 16457 ATGTTCTC-TATTGCATTAAA--------------TAAATAAtttttttCTTT------- 16494 | ||| ||| |||||||| |||| |||||||| | | Sbjct 115982 AAATTCAAATATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTAATCTAAAAAAG 116041 Query 16495 --------GCT-------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 | | |||| |||||||||||| |||| | |||||||||||| Sbjct 116042 GAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGA 116101 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 ||||||||| || || || || ||||| |||||||| || | |||||| | |||||| || Sbjct 116102 ATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAAC 116161 Query 16600 TTC 16602 ||| Sbjct 116162 TTC 116164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || ||||||||| |||| |||||||||| || || || || ||||| | ||||| || Sbjct 115169 TTCTGATATTCAGAAACTTTCTTTTCAAAAAAGTTAGTCTTCCCTTCAATAGAAATGTTC 115228 Query 16004 TCCATAAAATCAAAAGGATTT 16024 ||||||||||||||||||||| Sbjct 115229 TCCATAAAATCAAAAGGATTT 115249 >seq545 Length=42957 Score = 98.7 bits (108), Expect = 9e-16 Identities = 276/431 (64%), Gaps = 47/431 (11%) Strand=Plus/Minus Query 16231 TATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGT 16290 || |||||||||||| | ||| | |||||| || | | ||||| || || ||| Sbjct 28599 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 28540 Query 16291 AAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAA 16350 || || ||||| || ||||| || | |||||| || || ||||| ||||| || Sbjct 28539 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 28480 Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttact 16410 ||||||||| ||||| |||||||| |||| | || ||||| | | | |||||| Sbjct 28479 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 28420 Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC-TATTG 16469 | |||| |||||||| ||||||| || | | | | || ||| ||| | Sbjct 28419 AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAAT-CAAATTCGAATATAG 28361 Query 16470 CATTAAATAAAT-----------------AAtttttttCTTTGCT--------------- 16497 |||||||||| | ||| ||||| ||| | Sbjct 28360 CATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAATTTAAAGAAGGAAATA 28301 Query 16498 ------------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAAT 16545 |||| |||||||||||| |||| | |||||||||||||||||| Sbjct 28300 CCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAAT 28241 Query 16546 ATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AG 16604 ||| || || || || ||||| |||||||| || | ||| || | |||||| ||||| | Sbjct 28240 ATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTG 28181 Query 16605 AGTAAAACCTT 16615 || ||||| || Sbjct 28180 AGCAAAACGTT 28170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462360550445600