Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq11554 86.0 5e-12 seq2703 86.0 5e-12 seq1923 86.0 5e-12 seq7082 82.4 6e-11 >seq11554 Length=6653 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556 || |||||||||||||| || |||||| | | ||||| ||||||| || ||||| ||| Sbjct 1561 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 1502 Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | | ||| ||||||| || | || || | || || || |||||||| || ||| Sbjct 1501 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 1442 Query 20617 ATAGAACCTTTAAAA 20631 ||||| |||||||| Sbjct 1441 TTAGAAGCTTTAAAA 1427 >seq2703 Length=22513 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556 || |||||||||||||| || |||||| | | ||||| ||||||| || ||||| ||| Sbjct 10752 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 10811 Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | | ||| ||||||| || | || || | || || || |||||||| || ||| Sbjct 10812 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCACATATTTATTCTACACAT 10871 Query 20617 ATAGAACCTTTAAAA 20631 ||||| |||||||| Sbjct 10872 TTAGAAGCTTTAAAA 10886 >seq1923 Length=26693 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556 || |||||||||||||| || |||||| | | ||||| ||||||| || ||||| ||| Sbjct 18578 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 18519 Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | | ||| ||||||| || | || || | || || || |||||||| || ||| Sbjct 18518 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCACATATTTATTCTACACAT 18459 Query 20617 ATAGAACCTTTAAAA 20631 ||||| |||||||| Sbjct 18458 TTAGAAGCTTTAAAA 18444 >seq7082 Length=11116 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556 || |||||||||||||| || |||||| | | ||||| ||||||| || ||||| ||| Sbjct 6325 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 6384 Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | | ||| ||||||| || | || || | || || || |||||||| || ||| Sbjct 6385 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 6444 Query 20617 ATAGAACCTTTAAAA 20631 |||| |||||||| Sbjct 6445 TTAGAGGCTTTAAAA 6459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399056555019220