Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq11554 86.0 5e-12
seq2703 86.0 5e-12
seq1923 86.0 5e-12
seq7082 82.4 6e-11
>seq11554
Length=6653
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556
|| |||||||||||||| || |||||| | | ||||| ||||||| || ||||| |||
Sbjct 1561 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 1502
Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616
| | ||| ||||||| || | || || | || || || |||||||| || |||
Sbjct 1501 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 1442
Query 20617 ATAGAACCTTTAAAA 20631
||||| ||||||||
Sbjct 1441 TTAGAAGCTTTAAAA 1427
>seq2703
Length=22513
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556
|| |||||||||||||| || |||||| | | ||||| ||||||| || ||||| |||
Sbjct 10752 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 10811
Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616
| | ||| ||||||| || | || || | || || || |||||||| || |||
Sbjct 10812 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCACATATTTATTCTACACAT 10871
Query 20617 ATAGAACCTTTAAAA 20631
||||| ||||||||
Sbjct 10872 TTAGAAGCTTTAAAA 10886
>seq1923
Length=26693
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556
|| |||||||||||||| || |||||| | | ||||| ||||||| || ||||| |||
Sbjct 18578 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 18519
Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616
| | ||| ||||||| || | || || | || || || |||||||| || |||
Sbjct 18518 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCACATATTTATTCTACACAT 18459
Query 20617 ATAGAACCTTTAAAA 20631
||||| ||||||||
Sbjct 18458 TTAGAAGCTTTAAAA 18444
>seq7082
Length=11116
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556
|| |||||||||||||| || |||||| | | ||||| ||||||| || ||||| |||
Sbjct 6325 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 6384
Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616
| | ||| ||||||| || | || || | || || || |||||||| || |||
Sbjct 6385 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 6444
Query 20617 ATAGAACCTTTAAAA 20631
|||| ||||||||
Sbjct 6445 TTAGAGGCTTTAAAA 6459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399056555019220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |