Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq13211 93.3 4e-14
seq8748 93.3 4e-14
seq1949 93.3 4e-14
seq545 91.5 1e-13
seq6 89.7 5e-13
seq8819 87.8 2e-12
>seq13211
Length=5644
Score = 93.3 bits (102), Expect = 4e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
|| || || || || || || || |||||||||||||| || || ||||| ||||| |||
Sbjct 4623 CTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCAATTTTT 4682
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094
||| | ||||||||||| | ||||| || ||||| || || || || || || ||
Sbjct 4683 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGA 4742
Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123
|| || || || ||| |||||||| ||
Sbjct 4743 GATGAAGGACTTCATCGAGATTTTGCTTG 4771
>seq8748
Length=9037
Score = 93.3 bits (102), Expect = 4e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
|| || || || ||||| || || ||||||||||| || || || ||||| ||||| |||
Sbjct 8513 CTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 8572
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094
||| | ||||||||||| | ||||| || ||||| || || || || || || ||
Sbjct 8573 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGT 8632
Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123
|| || || || ||| |||||||| ||
Sbjct 8633 GATGAAGGACTTCATCGAGATTTTGCTTG 8661
>seq1949
Length=26475
Score = 93.3 bits (102), Expect = 4e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
|| || || || ||||| || || ||||||||||| || || || ||||| ||||| |||
Sbjct 11891 CTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 11950
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094
||| | ||||||||||| | ||||| || ||||| || || || || || || ||
Sbjct 11951 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGT 12010
Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123
|| || || || ||| |||||||| ||
Sbjct 12011 GATGAAGGACTTCATCGAGATTTTGCTTG 12039
>seq545
Length=42957
Score = 91.5 bits (100), Expect = 1e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
|| || || || ||||| || || ||||||||||| || || || ||||| ||||| |||
Sbjct 28447 CTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 28506
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094
||| | ||||||||||| ||||| || ||||| || || || || || || ||
Sbjct 28507 TGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGA 28566
Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127
|| || || || ||| |||||||| || |||
Sbjct 28567 GATGAAGGACTTCATCGAGATTTTGCTTGTCTA 28599
>seq6
Length=123133
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
|| || || || ||| | || || ||||||||||| || || || ||||| ||||| |||
Sbjct 115909 CTCATTGCTTTTGCCACAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 115850
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094
||| | ||||||||||| | ||||| || ||||| || || || || || || ||
Sbjct 115849 TGGCTAAAGAAACGCGGTTTTATGCCTGGGCTGACACAAAGTAATGAATTAATTTCTCGT 115790
Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123
|| || || || ||| |||||||| ||
Sbjct 115789 GATGAAGGACTTCATCGAGATTTTGCTTG 115761
>seq8819
Length=8975
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| || ||| |||| || || || |||||| |||| ||||| | ||
Sbjct 8529 ATGCAAATCTTCGTGAAAACTTTGACTGGGAAGACTATCACCCTCGAAGTTGAGGCATCT 8470
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | |||| ||||| | ||| ||||||||||||| | || || || |||
Sbjct 8469 GACACTATAGAAAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCACCAGATCAG 8410
Query 31313 CAGCGTCT 31320
||||||||
Sbjct 8409 CAGCGTCT 8402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445620433792320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |