Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13211 93.3 4e-14 seq8748 93.3 4e-14 seq1949 93.3 4e-14 seq545 91.5 1e-13 seq6 89.7 5e-13 seq8819 87.8 2e-12 >seq13211 Length=5644 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || || || || || |||||||||||||| || || ||||| ||||| ||| Sbjct 4623 CTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCAATTTTT 4682 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| | ||||| || ||||| || || || || || || || Sbjct 4683 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGA 4742 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || || || ||| |||||||| || Sbjct 4743 GATGAAGGACTTCATCGAGATTTTGCTTG 4771 >seq8748 Length=9037 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 8513 CTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 8572 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| | ||||| || ||||| || || || || || || || Sbjct 8573 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGT 8632 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || || || ||| |||||||| || Sbjct 8633 GATGAAGGACTTCATCGAGATTTTGCTTG 8661 >seq1949 Length=26475 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 11891 CTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 11950 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| | ||||| || ||||| || || || || || || || Sbjct 11951 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGT 12010 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || || || ||| |||||||| || Sbjct 12011 GATGAAGGACTTCATCGAGATTTTGCTTG 12039 >seq545 Length=42957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 28447 CTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 28506 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| ||||| || ||||| || || || || || || || Sbjct 28507 TGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGA 28566 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 || || || || ||| |||||||| || ||| Sbjct 28567 GATGAAGGACTTCATCGAGATTTTGCTTGTCTA 28599 >seq6 Length=123133 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||| | || || ||||||||||| || || || ||||| ||||| ||| Sbjct 115909 CTCATTGCTTTTGCCACAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 115850 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| | ||||| || ||||| || || || || || || || Sbjct 115849 TGGCTAAAGAAACGCGGTTTTATGCCTGGGCTGACACAAAGTAATGAATTAATTTCTCGT 115790 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || || || ||| |||||||| || Sbjct 115789 GATGAAGGACTTCATCGAGATTTTGCTTG 115761 >seq8819 Length=8975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || || || |||||| |||| ||||| | || Sbjct 8529 ATGCAAATCTTCGTGAAAACTTTGACTGGGAAGACTATCACCCTCGAAGTTGAGGCATCT 8470 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | ||| ||||||||||||| | || || || ||| Sbjct 8469 GACACTATAGAAAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCACCAGATCAG 8410 Query 31313 CAGCGTCT 31320 |||||||| Sbjct 8409 CAGCGTCT 8402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445620433792320