Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq554 118 1e-21 seq668 107 2e-18 seq865 105 8e-18 seq21 95.1 2e-14 >seq554 Length=42686 Score = 118 bits (130), Expect = 1e-21 Identities = 201/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 15020 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 15079 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 15080 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 15136 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 |||||| || || ||||| || ||| ||| ||||| | || || || |||| || Sbjct 15137 TGAATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTT 15196 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 15197 TCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 15256 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 15257 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 15306 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 |||| | ||||| ||||| ||||| |||||||| | || |||||||| || || | | Sbjct 16338 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 16397 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 16398 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 16457 Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157 | || |||||||||||| |||| || ||| Sbjct 16458 CAACAGTTGTTACTCCAGTATAAATGCCT 16486 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||| ||||| || || || ||||| ||| | | |||||||| Sbjct 10044 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 10103 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 10104 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 10163 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | | | || | |||||||| ||||| ||||| ||||||||||| |||| Sbjct 10164 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 10223 Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281 | |||||| || || ||||||||||| Sbjct 10224 TTGTATAAAGCT---TTGATATCTTCTGG 10249 >seq668 Length=40291 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 |||| | ||||| || |||||||| |||||||| | || |||||||| || || | | Sbjct 30026 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 30085 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 30086 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 30145 Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157 | || |||||||||||| |||| || ||| Sbjct 30146 CAACAGTTGTTACTCCAGTATAAATGCCT 30174 Score = 105 bits (116), Expect = 8e-18 Identities = 198/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || || ||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 28603 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 28662 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 28663 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 28719 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 || || || || ||||| || ||| ||| ||||| | || || || |||| || Sbjct 28720 TGGATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTT 28779 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 28780 TCAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 28839 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 28840 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 28889 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 || ||||| || || |||||||| ||||| ||||| || || ||||| | ||| || Sbjct 29103 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 29162 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 63874 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 29163 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 29221 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTT 63904 || || ||||||||||| |||||||| || Sbjct 29222 ACGATCATAAATAATAACTGAATTGAGTTT 29251 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||| ||||| ||||| || ||||| ||| | | |||||||| Sbjct 24055 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 24114 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 24115 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 24174 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | | | ||| | |||||||| ||||| ||||| ||||||||||| |||| Sbjct 24175 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 24234 Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281 | |||||| || || ||||||||||| Sbjct 24235 TTGTATAAAGCT---TTGATATCTTCTGG 24260 >seq865 Length=36480 Score = 105 bits (116), Expect = 8e-18 Identities = 198/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 34578 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 34637 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 34638 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 34694 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 ||| || || || ||||| || ||| ||| || || | || || || || | || Sbjct 34695 TGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTT 34754 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 34755 TCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 34814 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 34815 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 34864 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 |||| | ||||| ||||| ||||| |||||||| | || |||||||| || || | | Sbjct 36198 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 36257 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 36258 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 36317 Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157 | || |||||||||||| |||| || ||| Sbjct 36318 CAACAGTTGTTACTCCAGTATAAATGCCT 36346 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||| |||||||||||||| ||||| ||| | | |||||||| Sbjct 30177 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 30236 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 30237 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 30296 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | | | || | |||||||| || || ||||| ||||||||||| |||| Sbjct 30297 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 30356 Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281 | |||||| || || ||||||||||| Sbjct 30357 TTGTATAAAGCT---TTGATATCTTCTGG 30382 >seq21 Length=96658 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||| |||||||| ||||| ||||| ||| | | |||||||| Sbjct 32394 GTACGCAAATAATACATTCCTGTTTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 32335 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 32334 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 32275 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | | | || | |||||||| ||||| ||||| ||||||||||| |||| Sbjct 32274 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 32215 Query 62256 TT--ATAAACTCGCTTA-ATATCTTCTGG 62281 || ||||| |||| ||||||||||| Sbjct 32214 TTGTATAAA---GCTTTGATATCTTCTGG 32189 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 ||||| ||||| ||||| |||||||| | || |||||||| || || | |||||||| Sbjct 26531 TTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAGCATAATCT 26472 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 || || ||||||| | || || | ||| || |||| | | ||||| || || ||| Sbjct 26471 GGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAACTCAACAGTT 26412 Query 64137 GTTACTCCATTATATATTCCT 64157 ||||||||| |||| || ||| Sbjct 26411 GTTACTCCAGTATAAATGCCT 26391 Score = 91.5 bits (100), Expect = 2e-13 Identities = 195/290 (67%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || || ||||||||||| || || | || |||| ||||| |||||||||||| Sbjct 28139 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGTAACATTGGAATA 28080 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 28079 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 28023 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 ||| || || || ||||| || ||| ||| ||||| | || || || || | || Sbjct 28022 TGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAGCGATTAATTGTT 27963 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| || | || Sbjct 27962 TCAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAGGAAAGCTGT 27903 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 27902 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 27853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629611366226880