Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq554 123 4e-23
seq865 109 8e-19
seq668 109 8e-19
seq21 104 3e-17
>seq554
Length=42686
Score = 123 bits (136), Expect = 4e-23
Identities = 215/313 (69%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 15020 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 15079
Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208
|| ||||| || | ||||| || || ||||| | || |||||||| | |
Sbjct 15080 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 15139
Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268
||||| || || ||||| || ||| ||| ||||| | || || || |||| || |||
Sbjct 15140 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 15199
Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328
| || || || || ||| ||| ||| ||| | |||||| ||| | ||| ||
Sbjct 15200 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 15259
Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388
|| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 15260 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 15319
Query 80389 AGATTGTACGTCT 80401
|||||||| ||||
Sbjct 15320 AGATTGTAAGTCT 15332
Score = 107 bits (118), Expect = 3e-18
Identities = 117/154 (76%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740
|||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | |
Sbjct 16338 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 16397
Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800
|||||||||| || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 16398 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 16457
Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833
| || |||||||||||| |||| || ||| ||||
Sbjct 16458 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 16491
Score = 95.1 bits (104), Expect = 2e-14
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807
||||| | ||| ||||| || || || ||||| ||| | ||||||||||
Sbjct 10044 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 10103
Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 10104 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 10163
Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 10164 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 10223
Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953
| |||||| || || |||||||||||
Sbjct 10224 TTGTATAAAGCT---TTGATATCTTCTGG 10249
>seq865
Length=36480
Score = 109 bits (120), Expect = 8e-19
Identities = 212/313 (68%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 34578 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 34637
Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208
|| ||||| || | ||||| || || ||||| | || |||||||| | |
Sbjct 34638 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 34697
Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268
|| || || || ||||| || ||| ||| || || | || || || || | || |||
Sbjct 34698 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 34757
Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328
| || || || || ||| ||| ||| ||| | |||||| ||| | ||| ||
Sbjct 34758 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 34817
Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388
|| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 34818 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 34877
Query 80389 AGATTGTACGTCT 80401
|||||||| ||||
Sbjct 34878 AGATTGTAAGTCT 34890
Score = 104 bits (114), Expect = 3e-17
Identities = 150/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807
||||| | ||| |||||||||||||| ||||| ||| | ||||||||||
Sbjct 30177 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 30236
Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 30237 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 30296
Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927
|| | | | || | |||||||| || || ||||||||||||||||| ||||
Sbjct 30297 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 30356
Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953
| |||||| || || |||||||||||
Sbjct 30357 TTGTATAAAGCT---TTGATATCTTCTGG 30382
Score = 104 bits (114), Expect = 3e-17
Identities = 116/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740
|||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | |
Sbjct 36198 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 36257
Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800
|||||||||| || ||||||| | || || | ||| || |||| | | |||||||
Sbjct 36258 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 36317
Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833
| || |||||||||||| |||| || ||| ||||
Sbjct 36318 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 36351
>seq668
Length=40291
Score = 109 bits (120), Expect = 8e-19
Identities = 212/313 (68%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148
|| || ||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 28603 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 28662
Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208
|| ||||| || | ||||| || || ||||| | || |||||||| |
Sbjct 28663 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 28722
Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268
|| || || || ||||| || ||| ||| ||||| | || || || |||| || |||
Sbjct 28723 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 28782
Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328
| || || || || ||| ||| ||| ||| | |||||| ||| | ||| ||
Sbjct 28783 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 28842
Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388
|| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 28843 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 28902
Query 80389 AGATTGTACGTCT 80401
|||||||| ||||
Sbjct 28903 AGATTGTAAGTCT 28915
Score = 104 bits (114), Expect = 3e-17
Identities = 150/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807
||||| | ||| ||||| ||||| || ||||| ||| | ||||||||||
Sbjct 24055 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 24114
Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 24115 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 24174
Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927
|| | | | ||| | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 24175 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 24234
Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953
| |||||| || || |||||||||||
Sbjct 24235 TTGTATAAAGCT---TTGATATCTTCTGG 24260
Score = 104 bits (114), Expect = 3e-17
Identities = 116/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740
|||| | ||||| || |||||||| |||||||| || || |||||||| || | | |
Sbjct 30026 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 30085
Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800
||||||| || || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 30086 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 30145
Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833
| || |||||||||||| |||| || ||| ||||
Sbjct 30146 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 30179
Score = 102 bits (112), Expect = 1e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487
|| ||||| || || |||||||| ||||| ||||| || || ||||| | || |||
Sbjct 29103 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 29162
Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 80546
||| ||| | ||||||| ||| | |||||||| |||||||| | || |||||| ||
Sbjct 29163 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 29221
Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTT 80576
|| || ||||||||||| || ||||||||
Sbjct 29222 ACGATCATAAATAATAACTGAATTGAGTTT 29251
>seq21
Length=96658
Score = 104 bits (114), Expect = 3e-17
Identities = 150/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807
||||| | ||| |||||||| ||||| ||||| ||| | ||||||||||
Sbjct 32394 GTACGCAAATAATACATTCCTGTTTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 32335
Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 32334 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 32275
Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 32274 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 32215
Query 78928 TT--ATAAACTCGCTTA-ATATCTTCTGG 78953
|| ||||| |||| |||||||||||
Sbjct 32214 TTGTATAAA---GCTTTGATATCTTCTGG 32189
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/146 (75%), Gaps = 1/146 (1%)
Strand=Plus/Minus
Query 80689 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748
||||| ||||| ||||| |||||||| || || |||||||| || | | |||||||||
Sbjct 26531 TTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAGCATAATCT 26472
Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808
|| || ||||||| | || || | ||| || |||| | | ||||| || || |||
Sbjct 26471 GGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAACTCAACAGTT 26412
Query 80809 GTTACTCCATTATATATTCCT-TGGA 80833
||||||||| |||| || ||| ||||
Sbjct 26411 GTTACTCCAGTATAAATGCCTCTGGA 26386
Score = 96.9 bits (106), Expect = 5e-15
Identities = 209/313 (67%), Gaps = 0/313 (0%)
Strand=Plus/Minus
Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148
|| || ||||||||||| || || | || |||| ||||| ||||||||||||
Sbjct 28139 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGTAACATTGGAATA 28080
Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208
|| ||||| || | ||||| || || ||||| | || |||||||| | |
Sbjct 28079 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 28020
Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268
|| || || || ||||| || ||| ||| ||||| | || || || || | || |||
Sbjct 28019 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAGCGATTAATTGTTTCA 27960
Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328
| || || || || ||| ||| ||| ||| | |||||| || | || ||
Sbjct 27959 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAGGAAAGCTGTGGA 27900
Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388
|| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 27899 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 27840
Query 80389 AGATTGTACGTCT 80401
|||||||| ||||
Sbjct 27839 AGATTGTAAGTCT 27827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718033602881440
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