Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq554 123 4e-23 seq865 109 8e-19 seq668 109 8e-19 seq21 104 3e-17 >seq554 Length=42686 Score = 123 bits (136), Expect = 4e-23 Identities = 215/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 15020 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 15079 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 15080 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 15139 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 ||||| || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 15140 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 15199 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| ||| | ||| || Sbjct 15200 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 15259 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 15260 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 15319 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 15320 AGATTGTAAGTCT 15332 Score = 107 bits (118), Expect = 3e-18 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | | Sbjct 16338 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 16397 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 16398 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 16457 Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833 | || |||||||||||| |||| || ||| |||| Sbjct 16458 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 16491 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| ||||| || || || ||||| ||| | |||||||||| Sbjct 10044 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 10103 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 10104 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 10163 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 10164 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 10223 Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953 | |||||| || || ||||||||||| Sbjct 10224 TTGTATAAAGCT---TTGATATCTTCTGG 10249 >seq865 Length=36480 Score = 109 bits (120), Expect = 8e-19 Identities = 212/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 34578 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 34637 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 34638 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 34697 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 34698 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 34757 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| ||| | ||| || Sbjct 34758 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 34817 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 34818 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 34877 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 34878 AGATTGTAAGTCT 34890 Score = 104 bits (114), Expect = 3e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| |||||||||||||| ||||| ||| | |||||||||| Sbjct 30177 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 30236 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 30237 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 30296 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | || | |||||||| || || ||||||||||||||||| |||| Sbjct 30297 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 30356 Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953 | |||||| || || ||||||||||| Sbjct 30357 TTGTATAAAGCT---TTGATATCTTCTGG 30382 Score = 104 bits (114), Expect = 3e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | | Sbjct 36198 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 36257 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 |||||||||| || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 36258 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 36317 Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833 | || |||||||||||| |||| || ||| |||| Sbjct 36318 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 36351 >seq668 Length=40291 Score = 109 bits (120), Expect = 8e-19 Identities = 212/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || || ||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 28603 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 28662 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | Sbjct 28663 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 28722 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 28723 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 28782 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| ||| | ||| || Sbjct 28783 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 28842 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 28843 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 28902 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 28903 AGATTGTAAGTCT 28915 Score = 104 bits (114), Expect = 3e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| ||||| ||||| || ||||| ||| | |||||||||| Sbjct 24055 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 24114 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 24115 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 24174 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | ||| | |||||||| ||||| ||||||||||||||||| |||| Sbjct 24175 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 24234 Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953 | |||||| || || ||||||||||| Sbjct 24235 TTGTATAAAGCT---TTGATATCTTCTGG 24260 Score = 104 bits (114), Expect = 3e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 |||| | ||||| || |||||||| |||||||| || || |||||||| || | | | Sbjct 30026 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 30085 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 30086 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 30145 Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833 | || |||||||||||| |||| || ||| |||| Sbjct 30146 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 30179 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487 || ||||| || || |||||||| ||||| ||||| || || ||||| | || ||| Sbjct 29103 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 29162 Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 80546 ||| ||| | ||||||| ||| | |||||||| |||||||| | || |||||| || Sbjct 29163 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 29221 Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || || ||||||||||| || |||||||| Sbjct 29222 ACGATCATAAATAATAACTGAATTGAGTTT 29251 >seq21 Length=96658 Score = 104 bits (114), Expect = 3e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| |||||||| ||||| ||||| ||| | |||||||||| Sbjct 32394 GTACGCAAATAATACATTCCTGTTTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 32335 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 32334 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 32275 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 32274 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 32215 Query 78928 TT--ATAAACTCGCTTA-ATATCTTCTGG 78953 || ||||| |||| ||||||||||| Sbjct 32214 TTGTATAAA---GCTTTGATATCTTCTGG 32189 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 80689 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 ||||| ||||| ||||| |||||||| || || |||||||| || | | ||||||||| Sbjct 26531 TTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAGCATAATCT 26472 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 || || ||||||| | || || | ||| || |||| | | ||||| || || ||| Sbjct 26471 GGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAACTCAACAGTT 26412 Query 80809 GTTACTCCATTATATATTCCT-TGGA 80833 ||||||||| |||| || ||| |||| Sbjct 26411 GTTACTCCAGTATAAATGCCTCTGGA 26386 Score = 96.9 bits (106), Expect = 5e-15 Identities = 209/313 (67%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || || ||||||||||| || || | || |||| ||||| |||||||||||| Sbjct 28139 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGTAACATTGGAATA 28080 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 28079 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 28020 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 || || || || ||||| || ||| ||| ||||| | || || || || | || ||| Sbjct 28019 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAGCGATTAATTGTTTCA 27960 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| || | || || Sbjct 27959 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAGGAAAGCTGTGGA 27900 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 27899 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 27840 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 27839 AGATTGTAAGTCT 27827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718033602881440