Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq13211 159 3e-34 seq8748 145 7e-30 seq1949 145 7e-30 seq6 143 3e-29 seq545 138 1e-27 seq261 84.2 2e-11 >seq13211 Length=5644 Score = 159 bits (176), Expect = 3e-34 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 ||||| |||| |||||| |||||||| | |||||| || ||||||| | ||| | ||| Sbjct 4787 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTC 4728 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||| | ||| ||||| || || ||||| |||| |||||| ||||||||||| Sbjct 4727 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 4668 Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 || ||||||||||| ||||||||||| ||||| || || | ||||| ||||| || Sbjct 4667 ACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAATGA 4608 Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 14095 |||| ||| | | |||| |||||| |||| |||||| || |||||||| | Sbjct 4607 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 4548 Query 14096 TGTTTCAATAGCATTAAATAA 14116 | |||||||||||||| Sbjct 4547 TTCGAATATAGCATTAAATAA 4527 >seq8748 Length=9037 Score = 145 bits (160), Expect = 7e-30 Identities = 191/263 (73%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 8677 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 8618 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||| | ||| ||||| || || ||||| |||| |||||| ||||||||||| Sbjct 8617 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 8558 Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 || || |||||||| ||||||||||| ||||| || || | ||||| ||||| || Sbjct 8557 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGA 8498 Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCA- 14094 |||| ||| | | |||| |||||| |||| |||||| || |||||||| | Sbjct 8497 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 8438 Query 14095 -TTGTTTCAATAGCATTAAATAA 14116 | | | ||||||||||| || Sbjct 8437 CTCGAAT--ATAGCATTAAACAA 8417 >seq1949 Length=26475 Score = 145 bits (160), Expect = 7e-30 Identities = 191/263 (73%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 12055 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 11996 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||| | ||| ||||| || || ||||| |||| |||||| ||||||||||| Sbjct 11995 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 11936 Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 || || |||||||| ||||||||||| ||||| || || | ||||| ||||| || Sbjct 11935 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 11876 Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCA- 14094 |||| ||| | | |||| |||||| |||| |||||| || |||||||| | Sbjct 11875 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 11816 Query 14095 -TTGTTTCAATAGCATTAAATAA 14116 | | | ||||||||||| || Sbjct 11815 CTCGAAT--ATAGCATTAAACAA 11795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 |||||||| ||| || ||||||||| |||| | || || || |||||||| || ||| Sbjct 12676 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 12617 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || | || ||||| |||||||||||||| |||||| Sbjct 12616 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 12581 >seq6 Length=123133 Score = 143 bits (158), Expect = 3e-29 Identities = 191/264 (72%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 115745 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 115804 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||| | || ||||| || || ||||| |||| |||||| ||||||||||| Sbjct 115805 ATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 115864 Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 || || |||||||| |||||||||| ||||| || || | ||||| ||||| || Sbjct 115865 ACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAATGA 115924 Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 14095 |||| ||| | | |||| ||||||||||| |||||| || |||||||| | Sbjct 115925 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAATCAA- 115983 Query 14096 TGTTTCA---ATAGCATTAAATAA 14116 |||| ||||||||||| || Sbjct 115984 --ATTCAAATATAGCATTAAACAA 116005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 |||||||| ||| || ||||||||| |||| | |||||||| |||||||| || ||| Sbjct 115154 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTTTCAAAAAAGTTAGTCTTCCCT 115213 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || | || || || |||||||||||||| |||||| Sbjct 115214 TCAATAGAAATGTTCTCCATAAAATCAAAAGGATTT 115249 >seq545 Length=42957 Score = 138 bits (152), Expect = 1e-27 Identities = 183/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 |||| || ||| |||||||| | |||||| || ||||||| | ||| | ||| || Sbjct 28604 AAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 28545 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 ||| | ||| ||||| | || ||||| |||| |||||| ||||||||||| || Sbjct 28544 TGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 28485 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 || |||||||| |||||||| || ||||| || || | ||||| ||||| || |||| | Sbjct 28484 GAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCT 28425 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 || | | |||| |||||| |||| |||||| || |||||||| | | Sbjct 28424 TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAAT 28365 Query 14103 ATAGCATTAAATAA 14116 |||||||||||||| Sbjct 28364 ATAGCATTAAATAA 28351 >seq261 Length=53585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 |||||||| ||| || ||||||||| |||| | || || || |||||||| || ||| Sbjct 47802 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 47861 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || | || ||||| |||||||||||||| |||||| Sbjct 47862 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 47897 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 49143 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 49202 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||| | ||| ||||| || || ||||| |||| |||||| ||||||||||| Sbjct 49203 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 49262 Query 13976 TGACCCGGAAAAGAAT 13991 || || |||||| Sbjct 49263 ACTTCCAGAGAAGAAT 49278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479570913066400