Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq13211 159 3e-34
seq8748 145 7e-30
seq1949 145 7e-30
seq6 143 3e-29
seq545 138 1e-27
seq261 84.2 2e-11
>seq13211
Length=5644
Score = 159 bits (176), Expect = 3e-34
Identities = 192/261 (74%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915
||||| |||| |||||| |||||||| | |||||| || ||||||| | ||| | |||
Sbjct 4787 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTC 4728
Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||||||
Sbjct 4727 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 4668
Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035
|| ||||||||||| ||||||||||| ||||| || || | ||||| ||||| ||
Sbjct 4667 ACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAATGA 4608
Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 14095
|||| ||| | | |||| |||||| |||| |||||| || |||||||| |
Sbjct 4607 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 4548
Query 14096 TGTTTCAATAGCATTAAATAA 14116
| ||||||||||||||
Sbjct 4547 TTCGAATATAGCATTAAATAA 4527
>seq8748
Length=9037
Score = 145 bits (160), Expect = 7e-30
Identities = 191/263 (73%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915
||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | |||
Sbjct 8677 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 8618
Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||||||
Sbjct 8617 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 8558
Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035
|| || |||||||| ||||||||||| ||||| || || | ||||| ||||| ||
Sbjct 8557 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGA 8498
Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCA- 14094
|||| ||| | | |||| |||||| |||| |||||| || |||||||| |
Sbjct 8497 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 8438
Query 14095 -TTGTTTCAATAGCATTAAATAA 14116
| | | ||||||||||| ||
Sbjct 8437 CTCGAAT--ATAGCATTAAACAA 8417
>seq1949
Length=26475
Score = 145 bits (160), Expect = 7e-30
Identities = 191/263 (73%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915
||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | |||
Sbjct 12055 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 11996
Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||||||
Sbjct 11995 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 11936
Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035
|| || |||||||| ||||||||||| ||||| || || | ||||| ||||| ||
Sbjct 11935 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 11876
Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCA- 14094
|||| ||| | | |||| |||||| |||| |||||| || |||||||| |
Sbjct 11875 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 11816
Query 14095 -TTGTTTCAATAGCATTAAATAA 14116
| | | ||||||||||| ||
Sbjct 11815 CTCGAAT--ATAGCATTAAACAA 11795
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|||||||| ||| || ||||||||| |||| | || || || |||||||| || |||
Sbjct 12676 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 12617
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
|| | || ||||| |||||||||||||| ||||||
Sbjct 12616 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 12581
>seq6
Length=123133
Score = 143 bits (158), Expect = 3e-29
Identities = 191/264 (72%), Gaps = 6/264 (2%)
Strand=Plus/Plus
Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915
||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | |||
Sbjct 115745 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 115804
Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975
|| ||| | || ||||| || || ||||| |||| |||||| |||||||||||
Sbjct 115805 ATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 115864
Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035
|| || |||||||| |||||||||| ||||| || || | ||||| ||||| ||
Sbjct 115865 ACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAATGA 115924
Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 14095
|||| ||| | | |||| ||||||||||| |||||| || |||||||| |
Sbjct 115925 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAATCAA- 115983
Query 14096 TGTTTCA---ATAGCATTAAATAA 14116
|||| ||||||||||| ||
Sbjct 115984 --ATTCAAATATAGCATTAAACAA 116005
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|||||||| ||| || ||||||||| |||| | |||||||| |||||||| || |||
Sbjct 115154 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTTTCAAAAAAGTTAGTCTTCCCT 115213
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
|| | || || || |||||||||||||| ||||||
Sbjct 115214 TCAATAGAAATGTTCTCCATAAAATCAAAAGGATTT 115249
>seq545
Length=42957
Score = 138 bits (152), Expect = 1e-27
Identities = 183/254 (72%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922
|||| || ||| |||||||| | |||||| || ||||||| | ||| | ||| ||
Sbjct 28604 AAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 28545
Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982
||| | ||| ||||| | || ||||| |||| |||||| ||||||||||| ||
Sbjct 28544 TGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 28485
Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042
|| |||||||| |||||||| || ||||| || || | ||||| ||||| || |||| |
Sbjct 28484 GAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCT 28425
Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102
|| | | |||| |||||| |||| |||||| || |||||||| | |
Sbjct 28424 TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAAT 28365
Query 14103 ATAGCATTAAATAA 14116
||||||||||||||
Sbjct 28364 ATAGCATTAAATAA 28351
>seq261
Length=53585
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|||||||| ||| || ||||||||| |||| | || || || |||||||| || |||
Sbjct 47802 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 47861
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
|| | || ||||| |||||||||||||| ||||||
Sbjct 47862 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 47897
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915
||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | |||
Sbjct 49143 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 49202
Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||||||
Sbjct 49203 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 49262
Query 13976 TGACCCGGAAAAGAAT 13991
|| || ||||||
Sbjct 49263 ACTTCCAGAGAAGAAT 49278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479570913066400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |