Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq13211 158 1e-33 seq8748 149 6e-31 seq1949 149 6e-31 seq6 143 3e-29 seq261 84.2 2e-11 >seq13211 Length=5644 Score = 158 bits (174), Expect = 1e-33 Identities = 232/327 (71%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 ||||| || |||| |||| | ||||| ||| |||||||| || || || Sbjct 4871 AGGAAATAAATTA-TTAA-----CCTTTTCAATATCAACAGCCTCTCGAATTATTTCCTC 4818 Query 13614 AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACA 13673 |||| |||||| || || || | ||||| |||| |||||| |||||||| | Sbjct 4817 AATACGTTCATTATTTGGTTTATTATTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCG 4758 Query 13674 ATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCC 13733 |||||| || ||||||| | ||| | ||| || ||| | ||| ||||| || || Sbjct 4757 ATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGTCCAGGCATAAAACC 4698 Query 13734 TCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGC 13793 ||||| |||| |||||| |||||||| || ||| ||||||||||| ||||||||||| Sbjct 4697 GCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAGAATATACCCTCAACTGC 4638 Query 13794 AGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGC 13853 ||||| || || || ||||| ||||| || |||| ||| | | |||| ||| Sbjct 4637 TGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGC 4578 Query 13854 CCATTCAGAtttttttttAATAAAATC 13880 ||| |||| |||||| || |||||||| Sbjct 4577 CCAATCAGCTTTTTTCTTGATAAAATC 4551 >seq8748 Length=9037 Score = 149 bits (164), Expect = 6e-31 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 8677 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 8618 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || ||| | ||| ||||| || || ||||| |||| |||||| |||||||| || Sbjct 8617 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 8558 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||| ||||||||||| ||||| || || || ||||| ||||| || Sbjct 8557 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGA 8498 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 |||| ||| | | |||| |||||| |||| |||||| || |||||||| Sbjct 8497 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 8441 >seq1949 Length=26475 Score = 149 bits (164), Expect = 6e-31 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 12055 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 11996 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || ||| | ||| ||||| || || ||||| |||| |||||| |||||||| || Sbjct 11995 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 11936 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||| ||||||||||| ||||| || || || ||||| ||||| || Sbjct 11935 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 11876 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 |||| ||| | | |||| |||||| |||| |||||| || |||||||| Sbjct 11875 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 11819 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 |||||||| ||| || ||||||||| |||| | || || ||||||||||| || ||| Sbjct 12676 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 12617 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || | || ||||| ||||||||||| || |||||| Sbjct 12616 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 12581 >seq6 Length=123133 Score = 143 bits (158), Expect = 3e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 115745 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 115804 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || ||| | || ||||| || || ||||| |||| |||||| |||||||| || Sbjct 115805 ATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 115864 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||| |||||||||| ||||| || || || ||||| ||||| || Sbjct 115865 ACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAATGA 115924 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 |||| ||| | | |||| ||||||||||| |||||| || |||||||| Sbjct 115925 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAATC 115981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 |||||||| ||| || ||||||||| |||| | ||||||||||||||||| || ||| Sbjct 115154 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTTTCAAAAAAGTTAGTCTTCCCT 115213 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || | || || || ||||||||||| || |||||| Sbjct 115214 TCAATAGAAATGTTCTCCATAAAATCAAAAGGATTT 115249 >seq261 Length=53585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 |||||||| ||| || ||||||||| |||| | || || ||||||||||| || ||| Sbjct 47802 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 47861 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || | || ||||| ||||||||||| || |||||| Sbjct 47862 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 47897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478432086097440