Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq554 113 6e-20
seq668 111 2e-19
seq865 107 3e-18
seq21 102 1e-16
seq13211 89.7 7e-13
seq545 84.2 3e-11
>seq554
Length=42686
Score = 113 bits (124), Expect = 6e-20
Identities = 215/315 (68%), Gaps = 4/315 (1%)
Strand=Plus/Plus
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 15020 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 15079
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289
|| ||||| || ||||| || || ||||| | || |||||||| | ||
Sbjct 15080 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 15138
Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349
|||||| || || ||||| || ||| ||| ||||| | || || || |||| || |
Sbjct 15139 -AATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTT 15197
Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409
|| | || || || || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 15198 CAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 15257
Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469
|||| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 15258 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 15317
Query 72470 GTAGATTGTACGTCT 72484
|||||||| ||||
Sbjct 15318 TGAGATTGTAAGTCT 15332
Score = 113 bits (124), Expect = 6e-20
Identities = 118/154 (77%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823
|||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | |
Sbjct 16338 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 16397
Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883
|||||||||| || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 16398 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 16457
Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916
| || |||||||||||| |||| || ||| ||||
Sbjct 16458 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 16491
Score = 102 bits (112), Expect = 1e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570
|||||||| || || |||||||| ||||||||||| || || ||||| | || |||
Sbjct 15709 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 15768
Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629
||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| ||
Sbjct 15769 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 15827
Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659
|| || |||||||| || |||||||||||
Sbjct 15828 ACGATCATAAATAATTACTGAATTGAGTTT 15857
>seq668
Length=40291
Score = 111 bits (122), Expect = 2e-19
Identities = 116/150 (77%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570
|||||||| || || |||||||| ||||||||||| || || ||||| | || |||
Sbjct 29103 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 29162
Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629
||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| ||
Sbjct 29163 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 29221
Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659
|| || ||||||||||| |||||||||||
Sbjct 29222 ACGATCATAAATAATAACTGAATTGAGTTT 29251
Score = 107 bits (118), Expect = 3e-18
Identities = 117/154 (76%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823
|||| | ||||| || |||||||| |||||||| || || |||||||| || || | |
Sbjct 30026 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 30085
Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883
||||||| || || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 30086 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 30145
Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916
| || |||||||||||| |||| || ||| ||||
Sbjct 30146 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 30179
Score = 98.7 bits (108), Expect = 1e-15
Identities = 212/315 (67%), Gaps = 4/315 (1%)
Strand=Plus/Plus
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
|| || ||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 28603 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 28662
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289
|| ||||| || ||||| || || ||||| | || |||||||| | ||
Sbjct 28663 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 28721
Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349
|| || || || ||||| || ||| ||| ||||| | || || || |||| || |
Sbjct 28722 -GATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTT 28780
Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409
|| | || || || || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 28781 CAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 28840
Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469
|||| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 28841 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 28900
Query 72470 GTAGATTGTACGTCT 72484
|||||||| ||||
Sbjct 28901 TGAGATTGTAAGTCT 28915
>seq865
Length=36480
Score = 107 bits (118), Expect = 3e-18
Identities = 117/154 (76%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823
|||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | |
Sbjct 36198 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 36257
Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883
|||||||||| || ||||||| | || || | ||| || |||| | | |||||||
Sbjct 36258 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 36317
Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916
| || |||||||||||| |||| || ||| ||||
Sbjct 36318 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 36351
Score = 102 bits (112), Expect = 1e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570
|||||||| || || |||||||| ||||||||||| || || ||||| | || |||
Sbjct 35270 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 35329
Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629
||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| ||
Sbjct 35330 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 35388
Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659
|| || |||||||| || |||||||||||
Sbjct 35389 ACGATCATAAATAATTACTGAATTGAGTTT 35418
Score = 98.7 bits (108), Expect = 1e-15
Identities = 212/315 (67%), Gaps = 4/315 (1%)
Strand=Plus/Plus
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 34578 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 34637
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289
|| ||||| || ||||| || || ||||| | || |||||||| | ||
Sbjct 34638 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 34696
Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349
||| || || || ||||| || ||| ||| || || | || || || || | || |
Sbjct 34697 -AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTT 34755
Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409
|| | || || || || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 34756 CAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 34815
Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469
|||| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 34816 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 34875
Query 72470 GTAGATTGTACGTCT 72484
|||||||| ||||
Sbjct 34876 TGAGATTGTAAGTCT 34890
>seq21
Length=96658
Score = 102 bits (112), Expect = 1e-16
Identities = 111/146 (76%), Gaps = 1/146 (1%)
Strand=Plus/Minus
Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831
||||| ||||| ||||| |||||||| || || |||||||| || || | |||||||||
Sbjct 26531 TTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAGCATAATCT 26472
Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891
|| || ||||||| | || || | ||| || |||| | | ||||| || || |||
Sbjct 26471 GGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAACTCAACAGTT 26412
Query 72892 GTTACTCCATTATATATTCCT-TGGA 72916
||||||||| |||| || ||| ||||
Sbjct 26411 GTTACTCCAGTATAAATGCCTCTGGA 26386
Score = 102 bits (112), Expect = 1e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570
|||||||| || || |||||||| | ||||||||| || || ||||| | || |||
Sbjct 27463 TGTATTCCAACAGCAACACGCATCAGCATATGCTGTGGCCTCTCAACTACTTTTCCATTG 27404
Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629
||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| ||
Sbjct 27403 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 27345
Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659
|| || |||||||| || |||||||||||
Sbjct 27344 ACGATCATAAATAATTACTGAATTGAGTTT 27315
Score = 86.0 bits (94), Expect = 8e-12
Identities = 209/315 (66%), Gaps = 4/315 (1%)
Strand=Plus/Minus
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
|| || ||||||||||| || || | || |||| ||||| ||||||||||||
Sbjct 28139 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGTAACATTGGAATA 28080
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289
|| ||||| || ||||| || || ||||| | || |||||||| | ||
Sbjct 28079 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 28021
Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349
||| || || || ||||| || ||| ||| ||||| | || || || || | || |
Sbjct 28020 -AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAGCGATTAATTGTTT 27962
Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409
|| | || || || || ||| | | ||| ||| | |||||| || | ||
Sbjct 27961 CAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAGGAAAGCTGTG 27902
Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469
|||| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 27901 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 27842
Query 72470 GTAGATTGTACGTCT 72484
|||||||| ||||
Sbjct 27841 TGAGATTGTAAGTCT 27827
Score = 86.0 bits (94), Expect = 8e-12
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890
||||| | ||| ||||| |||||||| ||||| ||| | | ||||||||
Sbjct 32394 GTACGCAAATAATACATTCCTGTTTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 32335
Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950
|| | ||| | ||| | ||||| || || || | ||| | || |||||||| |||||
Sbjct 32334 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 32275
Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 71010
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 32274 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 32215
Query 71011 TT--ATAAACTCGCTTA-ATATCTTCTGG 71036
|| ||||| |||| |||||||||||
Sbjct 32214 TTGTATAAA---GCTTTGATATCTTCTGG 32189
>seq13211
Length=5644
Score = 89.7 bits (98), Expect = 7e-13
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106
||||||| || | ||||| || ||||| | || || || ||||||| | |||||||
Sbjct 4789 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4730
Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166
|| || || ||||| ||||| | || || || || |||||||| || | |||
Sbjct 4729 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4670
Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213
|| |||||||||||| || || || ||||| ||||| ||||| ||
Sbjct 4669 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAG 4623
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||||| ||| ||||| || || |||||||||||||||||| |||||||| ||
Sbjct 4465 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 4406
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| |||||||| || ||||| | ||||| | | || |||||| | ||| |||||
Sbjct 4405 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 4346
Query 42445 A 42445
|
Sbjct 4345 A 4345
>seq545
Length=42957
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||||| ||| ||||| || || |||||||||||||||||| |||||||| ||
Sbjct 28288 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 28229
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| |||||||| || ||||| | ||||| | | || |||||| | ||| |||||
Sbjct 28228 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 28169
Query 42445 A 42445
|
Sbjct 28168 A 28168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670919435468960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |