Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq554 113 6e-20 seq668 111 2e-19 seq865 107 3e-18 seq21 102 1e-16 seq13211 89.7 7e-13 seq545 84.2 3e-11 >seq554 Length=42686 Score = 113 bits (124), Expect = 6e-20 Identities = 215/315 (68%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 15020 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 15079 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 || ||||| || ||||| || || ||||| | || |||||||| | || Sbjct 15080 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 15138 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 |||||| || || ||||| || ||| ||| ||||| | || || || |||| || | Sbjct 15139 -AATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTT 15197 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409 || | || || || || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 15198 CAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 15257 Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 |||| | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 15258 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 15317 Query 72470 GTAGATTGTACGTCT 72484 |||||||| |||| Sbjct 15318 TGAGATTGTAAGTCT 15332 Score = 113 bits (124), Expect = 6e-20 Identities = 118/154 (77%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 16338 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 16397 Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 16398 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 16457 Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916 | || |||||||||||| |||| || ||| |||| Sbjct 16458 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 16491 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 |||||||| || || |||||||| ||||||||||| || || ||||| | || ||| Sbjct 15709 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 15768 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 15769 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 15827 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || |||||||| || ||||||||||| Sbjct 15828 ACGATCATAAATAATTACTGAATTGAGTTT 15857 >seq668 Length=40291 Score = 111 bits (122), Expect = 2e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 |||||||| || || |||||||| ||||||||||| || || ||||| | || ||| Sbjct 29103 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 29162 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 29163 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 29221 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || ||||||||||| ||||||||||| Sbjct 29222 ACGATCATAAATAATAACTGAATTGAGTTT 29251 Score = 107 bits (118), Expect = 3e-18 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823 |||| | ||||| || |||||||| |||||||| || || |||||||| || || | | Sbjct 30026 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 30085 Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 30086 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 30145 Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916 | || |||||||||||| |||| || ||| |||| Sbjct 30146 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 30179 Score = 98.7 bits (108), Expect = 1e-15 Identities = 212/315 (67%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 || || ||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 28603 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 28662 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 || ||||| || ||||| || || ||||| | || |||||||| | || Sbjct 28663 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 28721 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 || || || || ||||| || ||| ||| ||||| | || || || |||| || | Sbjct 28722 -GATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTT 28780 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409 || | || || || || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 28781 CAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 28840 Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 |||| | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 28841 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 28900 Query 72470 GTAGATTGTACGTCT 72484 |||||||| |||| Sbjct 28901 TGAGATTGTAAGTCT 28915 >seq865 Length=36480 Score = 107 bits (118), Expect = 3e-18 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 36198 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 36257 Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883 |||||||||| || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 36258 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 36317 Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916 | || |||||||||||| |||| || ||| |||| Sbjct 36318 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 36351 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 |||||||| || || |||||||| ||||||||||| || || ||||| | || ||| Sbjct 35270 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 35329 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 35330 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 35388 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || |||||||| || ||||||||||| Sbjct 35389 ACGATCATAAATAATTACTGAATTGAGTTT 35418 Score = 98.7 bits (108), Expect = 1e-15 Identities = 212/315 (67%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 34578 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 34637 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 || ||||| || ||||| || || ||||| | || |||||||| | || Sbjct 34638 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 34696 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 ||| || || || ||||| || ||| ||| || || | || || || || | || | Sbjct 34697 -AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTT 34755 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409 || | || || || || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 34756 CAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 34815 Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 |||| | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 34816 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 34875 Query 72470 GTAGATTGTACGTCT 72484 |||||||| |||| Sbjct 34876 TGAGATTGTAAGTCT 34890 >seq21 Length=96658 Score = 102 bits (112), Expect = 1e-16 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 ||||| ||||| ||||| |||||||| || || |||||||| || || | ||||||||| Sbjct 26531 TTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAGCATAATCT 26472 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 || || ||||||| | || || | ||| || |||| | | ||||| || || ||| Sbjct 26471 GGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAACTCAACAGTT 26412 Query 72892 GTTACTCCATTATATATTCCT-TGGA 72916 ||||||||| |||| || ||| |||| Sbjct 26411 GTTACTCCAGTATAAATGCCTCTGGA 26386 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 |||||||| || || |||||||| | ||||||||| || || ||||| | || ||| Sbjct 27463 TGTATTCCAACAGCAACACGCATCAGCATATGCTGTGGCCTCTCAACTACTTTTCCATTG 27404 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 27403 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 27345 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || |||||||| || ||||||||||| Sbjct 27344 ACGATCATAAATAATTACTGAATTGAGTTT 27315 Score = 86.0 bits (94), Expect = 8e-12 Identities = 209/315 (66%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 || || ||||||||||| || || | || |||| ||||| |||||||||||| Sbjct 28139 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGTAACATTGGAATA 28080 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 || ||||| || ||||| || || ||||| | || |||||||| | || Sbjct 28079 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 28021 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 ||| || || || ||||| || ||| ||| ||||| | || || || || | || | Sbjct 28020 -AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAGCGATTAATTGTTT 27962 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409 || | || || || || ||| | | ||| ||| | |||||| || | || Sbjct 27961 CAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAGGAAAGCTGTG 27902 Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 |||| | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 27901 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 27842 Query 72470 GTAGATTGTACGTCT 72484 |||||||| |||| Sbjct 27841 TGAGATTGTAAGTCT 27827 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||| | ||| ||||| |||||||| ||||| ||| | | |||||||| Sbjct 32394 GTACGCAAATAATACATTCCTGTTTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 32335 Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950 || | ||| | ||| | ||||| || || || | ||| | || |||||||| ||||| Sbjct 32334 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 32275 Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 71010 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 32274 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 32215 Query 71011 TT--ATAAACTCGCTTA-ATATCTTCTGG 71036 || ||||| |||| ||||||||||| Sbjct 32214 TTGTATAAA---GCTTTGATATCTTCTGG 32189 >seq13211 Length=5644 Score = 89.7 bits (98), Expect = 7e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106 ||||||| || | ||||| || ||||| | || || || ||||||| | ||||||| Sbjct 4789 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4730 Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 || || || ||||| ||||| | || || || || |||||||| || | ||| Sbjct 4729 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4670 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213 || |||||||||||| || || || ||||| ||||| ||||| || Sbjct 4669 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAG 4623 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||| ||||| || || |||||||||||||||||| |||||||| || Sbjct 4465 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 4406 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || |||||||| || ||||| | ||||| | | || |||||| | ||| ||||| Sbjct 4405 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 4346 Query 42445 A 42445 | Sbjct 4345 A 4345 >seq545 Length=42957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||| ||||| || || |||||||||||||||||| |||||||| || Sbjct 28288 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 28229 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || |||||||| || ||||| | ||||| | | || |||||| | ||| ||||| Sbjct 28228 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 28169 Query 42445 A 42445 | Sbjct 28168 A 28168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670919435468960