Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq13211 105 6e-18 seq545 104 2e-17 seq8748 98.7 9e-16 seq1949 98.7 9e-16 seq6 98.7 9e-16 >seq13211 Length=5644 Score = 105 bits (116), Expect = 6e-18 Identities = 327/503 (65%), Gaps = 46/503 (9%) Strand=Plus/Minus Query 13070 TTTTCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAAT-GGAGGATT 13128 ||||| |||||||| || || || ||| || || | ||||||| || | || ||| Sbjct 4852 TTTTCAATATCAACAGCCTCTCGAATTATTTC-CTCAATACGTTCATTATTTGGTTTATT 4794 Query 13129 TGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTAT 13188 | ||| | || | | ||| |||||||| | || | ||||||||||| | || Sbjct 4793 ATTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAAT 4734 Query 13189 TAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGC 13248 || || || ||| || || ||||||| || ||||| || | |||||| || || Sbjct 4733 TAATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGC 4674 Query 13249 AGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC 13308 |||||| || ||||| ||||| || |||||||||||||| || || | | |||||| Sbjct 4673 AGCAAAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACC 4614 Query 13309 ATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTT-----A 13363 | | | | | |||||| | |||| ||||| | ||||||| || | Sbjct 4613 AAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAA 4554 Query 13364 ACGCAGTTC----ATA---TTTTCTA---TTGCG---TTAAATAAA--TAAtttttttCC 13408 | | ||| ||| || || ||| ||||| ||| | |||||||| Sbjct 4553 ATCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAA 4494 Query 13409 T-------------TACTGTCTAA----------AATATAAGTATCTATCAATAAGCTAT 13445 | ||| || || |||||||||||| || ||| || Sbjct 4493 TCTAAAAAAGGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAAT 4434 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 |||||||||||||||||||||| || || ||||| || ||||||||||| | |||||||| Sbjct 4433 ACATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTG 4374 Query 13506 ATACCTGAACTTC-GGAGTAAAA 13527 || |||||||| ||| |||| Sbjct 4373 GTATTTGAACTTCTTGAGCAAAA 4351 >seq545 Length=42957 Score = 104 bits (114), Expect = 2e-17 Identities = 89/109 (82%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || ||| |||||||||||||||||||||||| || || ||||| Sbjct 28282 AATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTG 28223 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAA 13527 || ||||||||||| | |||||||| || |||||||| ||| |||| Sbjct 28222 AAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAA 28174 >seq8748 Length=9037 Score = 98.7 bits (108), Expect = 9e-16 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || ||| |||||||||||||||||||||||| || || ||||| Sbjct 8354 AATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTG 8295 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAA 13527 || ||||||||||| | ||| |||| || |||||||| ||| |||| Sbjct 8294 AAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAAA 8246 >seq1949 Length=26475 Score = 98.7 bits (108), Expect = 9e-16 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || ||| |||||||||||||||||||||||| || || ||||| Sbjct 11732 AATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTG 11673 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAA 13527 || ||||||||||| | ||| |||| || |||||||| ||| |||| Sbjct 11672 AAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAAA 11624 >seq6 Length=123133 Score = 98.7 bits (108), Expect = 9e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || ||| |||||||||||||||||||||||| || || ||||| Sbjct 116066 AATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTG 116125 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || ||||||||||| | ||| |||| || |||||||| Sbjct 116126 AAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTC 116164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430844802942792