Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq659 107 4e-18 seq18229 105 2e-17 seq16001 105 2e-17 seq12421 105 2e-17 seq4503 105 2e-17 seq91 105 2e-17 seq10671 102 2e-16 seq11515 98.7 2e-15 seq856 98.7 2e-15 seq13147 95.1 3e-14 seq8748 89.7 1e-12 seq1949 89.7 1e-12 seq10756 87.8 4e-12 seq6 87.8 4e-12 seq13211 86.0 1e-11 seq545 86.0 1e-11 seq8819 84.2 5e-11 >seq659 Length=40447 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || ||||| | |||| Sbjct 37878 TGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTTTCAATGGTA 37937 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || ||||| || || ||||| || || || || || ||||| |||||| Sbjct 37938 TCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 37997 Query 104558 AT 104559 || Sbjct 37998 AT 37999 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||||||||| || ||||| || || ||||| ||||| || || ||||| | ||| Sbjct 38419 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGATGGT 38478 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || || || || || || |||||||| || || || || ||||| Sbjct 38479 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 38538 Query 104557 CATTTTG 104563 ||| ||| Sbjct 38539 CATATTG 38545 >seq18229 Length=3682 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || |||||||| ||||| ||||| || ||||| || | ||| Sbjct 1766 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1707 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || ||||| || |||||||| || || || || || |||||||| ||||| Sbjct 1706 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1647 Query 104557 CATTTT 104562 ||| || Sbjct 1646 CATATT 1641 >seq16001 Length=4432 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || |||||||| ||||| ||||| || ||||| || | ||| Sbjct 2075 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 2016 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || ||||| || |||||||| || || || || || |||||||| ||||| Sbjct 2015 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1956 Query 104557 CATTTT 104562 ||| || Sbjct 1955 CATATT 1950 >seq12421 Length=6087 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || |||||||| ||||| ||||| || ||||| || | ||| Sbjct 1092 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1033 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || ||||| || |||||||| || || || || || |||||||| ||||| Sbjct 1032 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 973 Query 104557 CATTTT 104562 ||| || Sbjct 972 CATATT 967 >seq4503 Length=16266 Score = 105 bits (116), Expect = 2e-17 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| |||||||| || || || ||||| ||||||||||| ||||| ||||| || | ||| Sbjct 8071 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATCTTAGCTTTCACATTCTCAATGGT 8012 Query 104497 ATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555 ||| | ||| ||| || || || ||||||||||| || ||||| || || ||||| || | Sbjct 8011 ATC-CGAGGCTTCCACTTCAAGAGTAATAGTCTTTCCCGTAAGAGTCTTCACAAAAATTT 7953 Query 104556 GCATT 104560 ||||| Sbjct 7952 GCATT 7948 >seq91 Length=67459 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || |||||||| ||||| ||||| || ||||| || | ||| Sbjct 15191 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 15132 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || ||||| || |||||||| || || || || || |||||||| ||||| Sbjct 15131 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 15072 Query 104557 CATTTT 104562 ||| || Sbjct 15071 CATATT 15066 >seq10671 Length=7258 Score = 102 bits (112), Expect = 2e-16 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| |||||||| || || || || || ||||||||||| ||||| ||||| || | || Sbjct 3578 CTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTCAATAGT 3519 Query 104497 ATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555 ||| | ||| ||| || || || ||||||||||| || |||||||| || ||||| || | Sbjct 3518 ATC-CGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAAATTT 3460 Query 104556 GCATT 104560 ||||| Sbjct 3459 GCATT 3455 >seq11515 Length=6677 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| |||||||| ||||| |||||||| || || || ||||| | || Sbjct 5403 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 5344 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || || ||||| || ||||| |||||||| || || || || |||||| Sbjct 5343 TCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACTAAAATCTGC 5284 Query 104558 AT 104559 || Sbjct 5283 AT 5282 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || || || | |||| Sbjct 5671 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 5612 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || | ||| || ||||| || || ||||| || || || || || ||||| |||||| Sbjct 5611 TCAGACGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 5552 Query 104558 AT 104559 || Sbjct 5551 AT 5550 Score = 96.9 bits (106), Expect = 8e-15 Identities = 96/123 (78%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC-ATTTTCTACGGT 104496 || ||||||||||| |||||||| ||||| |||||||| || || || ||||| | || Sbjct 5073 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTTCGATAGT 5014 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 || || ||| || || ||||| || ||||| |||||||| || || ||||| ||||| Sbjct 5013 GTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTG 4954 Query 104557 CAT 104559 ||| Sbjct 4953 CAT 4951 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||||||||| || ||||| || || ||||| ||||| || |||||||| | ||| Sbjct 4802 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 4743 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || || || || || || |||||||| || || || || ||||| Sbjct 4742 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 4683 Query 104557 CATTTTG 104563 ||| ||| Sbjct 4682 CATATTG 4676 >seq856 Length=36659 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| |||||||| ||||| |||||||| || || || ||||| | || Sbjct 5130 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 5071 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || || ||||| || ||||| |||||||| || || || || |||||| Sbjct 5070 TCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAAATCTGC 5011 Query 104558 AT 104559 || Sbjct 5010 AT 5009 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || || || | |||| Sbjct 5398 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 5339 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || | ||| || ||||| || || ||||| || || || || || ||||| |||||| Sbjct 5338 TCAGACGCTTCCACTTCTAGGGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 5279 Query 104558 AT 104559 || Sbjct 5278 AT 5277 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||||||||| || ||||| || || ||||| ||||| || |||||||| | ||| Sbjct 4859 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 4800 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || || || || || || |||||||| || || || || ||||| Sbjct 4799 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 4740 Query 104557 CATTTTG 104563 ||| ||| Sbjct 4739 CATATTG 4733 >seq13147 Length=5676 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||||||||| || ||||| || || ||||| ||||| || |||||||| | ||| Sbjct 5229 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 5288 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || || || || || || |||||||| || || || || ||||| Sbjct 5289 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 5348 Query 104557 CATTTTG 104563 ||| ||| Sbjct 5349 CATATTG 5355 >seq8748 Length=9037 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || || ||||| | |||||||| ||||| || || ||||| ||||| Sbjct 8252 TCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 8311 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||||||| ||||| |||||| ||||||||||| Sbjct 8312 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 8353 >seq1949 Length=26475 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || || ||||| | |||||||| ||||| || || ||||| ||||| Sbjct 11630 TCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 11689 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||||||| ||||| |||||| ||||||||||| Sbjct 11690 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 11731 >seq10756 Length=7202 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||||||||| || || || || || ||||| |||||||| || || |||||||| | || Sbjct 4743 CTGTTGATCCGGTGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATCGT 4802 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| | || || || || ||||||||||| || || | ||||| ||||| ||||| Sbjct 4803 GTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTTTTGACAAAAATCTG 4862 Query 104557 CAT 104559 ||| Sbjct 4863 CAT 4865 >seq6 Length=123133 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || || || || ||||| | |||||||| ||||| || || ||||| |||||| Sbjct 116167 CAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAAT 116108 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||||||||||| ||||| |||||| ||||||||||| Sbjct 116107 ATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 116067 >seq13211 Length=5644 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || || || || | |||||||| ||||| || || ||||| ||||| Sbjct 4357 TCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 4416 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||||||| ||||| |||||| ||||||||||| Sbjct 4417 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 4458 >seq545 Length=42957 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || || || || | |||||||| ||||| || || ||||| ||||| Sbjct 28180 TCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 28239 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||||||| ||||| |||||| ||||||||||| Sbjct 28240 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 28281 >seq8819 Length=8975 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| |||||| |||| ||||||||||| || || || || || | |||| Sbjct 8679 TGCTGATCAGGAGGAATTCCT-CTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 8737 Query 104498 TCGCTAGGTTCTACCTCTA-GTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 || | ||| || |||| | || || ||||| || || || || || ||||| ||||| Sbjct 8738 TCAGACGCTTCCACTTCTAGGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTG 8797 Query 104557 CAT 104559 ||| Sbjct 8798 CAT 8800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151011948958768