Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq659 107 4e-18
seq18229 105 2e-17
seq16001 105 2e-17
seq12421 105 2e-17
seq4503 105 2e-17
seq91 105 2e-17
seq10671 102 2e-16
seq11515 98.7 2e-15
seq856 98.7 2e-15
seq13147 95.1 3e-14
seq8748 89.7 1e-12
seq1949 89.7 1e-12
seq10756 87.8 4e-12
seq6 87.8 4e-12
seq13211 86.0 1e-11
seq545 86.0 1e-11
seq8819 84.2 5e-11
>seq659
Length=40447
Score = 107 bits (118), Expect = 4e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|| ||||||||||| ||||||||||| ||||||||||| || || || ||||| | ||||
Sbjct 37878 TGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTTTCAATGGTA 37937
Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557
|| || ||| || ||||| || || ||||| || || || || || ||||| ||||||
Sbjct 37938 TCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 37997
Query 104558 AT 104559
||
Sbjct 37998 AT 37999
Score = 89.7 bits (98), Expect = 1e-12
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
||| ||||||||||| || ||||| || || ||||| ||||| || || ||||| | |||
Sbjct 38419 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGATGGT 38478
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
||| || || || || || || || || || |||||||| || || || || |||||
Sbjct 38479 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 38538
Query 104557 CATTTTG 104563
||| |||
Sbjct 38539 CATATTG 38545
>seq18229
Length=3682
Score = 105 bits (116), Expect = 2e-17
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
|||||||||||| || || || |||||||| ||||| ||||| || ||||| || | |||
Sbjct 1766 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1707
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
||| || || ||||| || |||||||| || || || || || |||||||| |||||
Sbjct 1706 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1647
Query 104557 CATTTT 104562
||| ||
Sbjct 1646 CATATT 1641
>seq16001
Length=4432
Score = 105 bits (116), Expect = 2e-17
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
|||||||||||| || || || |||||||| ||||| ||||| || ||||| || | |||
Sbjct 2075 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 2016
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
||| || || ||||| || |||||||| || || || || || |||||||| |||||
Sbjct 2015 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1956
Query 104557 CATTTT 104562
||| ||
Sbjct 1955 CATATT 1950
>seq12421
Length=6087
Score = 105 bits (116), Expect = 2e-17
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
|||||||||||| || || || |||||||| ||||| ||||| || ||||| || | |||
Sbjct 1092 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1033
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
||| || || ||||| || |||||||| || || || || || |||||||| |||||
Sbjct 1032 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 973
Query 104557 CATTTT 104562
||| ||
Sbjct 972 CATATT 967
>seq4503
Length=16266
Score = 105 bits (116), Expect = 2e-17
Identities = 100/125 (80%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
||| |||||||| || || || ||||| ||||||||||| ||||| ||||| || | |||
Sbjct 8071 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATCTTAGCTTTCACATTCTCAATGGT 8012
Query 104497 ATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555
||| | ||| ||| || || || ||||||||||| || ||||| || || ||||| || |
Sbjct 8011 ATC-CGAGGCTTCCACTTCAAGAGTAATAGTCTTTCCCGTAAGAGTCTTCACAAAAATTT 7953
Query 104556 GCATT 104560
|||||
Sbjct 7952 GCATT 7948
>seq91
Length=67459
Score = 105 bits (116), Expect = 2e-17
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
|||||||||||| || || || |||||||| ||||| ||||| || ||||| || | |||
Sbjct 15191 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 15132
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
||| || || ||||| || |||||||| || || || || || |||||||| |||||
Sbjct 15131 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 15072
Query 104557 CATTTT 104562
||| ||
Sbjct 15071 CATATT 15066
>seq10671
Length=7258
Score = 102 bits (112), Expect = 2e-16
Identities = 99/125 (79%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
||| |||||||| || || || || || ||||||||||| ||||| ||||| || | ||
Sbjct 3578 CTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTCAATAGT 3519
Query 104497 ATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555
||| | ||| ||| || || || ||||||||||| || |||||||| || ||||| || |
Sbjct 3518 ATC-CGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAAATTT 3460
Query 104556 GCATT 104560
|||||
Sbjct 3459 GCATT 3455
>seq11515
Length=6677
Score = 98.7 bits (108), Expect = 2e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|| ||||||||||| |||||||| ||||| |||||||| || || || ||||| | ||
Sbjct 5403 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 5344
Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557
|| || ||| || || ||||| || ||||| |||||||| || || || || ||||||
Sbjct 5343 TCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACTAAAATCTGC 5284
Query 104558 AT 104559
||
Sbjct 5283 AT 5282
Score = 98.7 bits (108), Expect = 2e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|| ||||||||||| ||||||||||| ||||||||||| || || || || || | ||||
Sbjct 5671 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 5612
Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557
|| | ||| || ||||| || || ||||| || || || || || ||||| ||||||
Sbjct 5611 TCAGACGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 5552
Query 104558 AT 104559
||
Sbjct 5551 AT 5550
Score = 96.9 bits (106), Expect = 8e-15
Identities = 96/123 (78%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC-ATTTTCTACGGT 104496
|| ||||||||||| |||||||| ||||| |||||||| || || || ||||| | ||
Sbjct 5073 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTTCGATAGT 5014
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
|| || ||| || || ||||| || ||||| |||||||| || || ||||| |||||
Sbjct 5013 GTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTG 4954
Query 104557 CAT 104559
|||
Sbjct 4953 CAT 4951
Score = 95.1 bits (104), Expect = 3e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
||| ||||||||||| || ||||| || || ||||| ||||| || |||||||| | |||
Sbjct 4802 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 4743
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
||| || || || || || || || || || |||||||| || || || || |||||
Sbjct 4742 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 4683
Query 104557 CATTTTG 104563
||| |||
Sbjct 4682 CATATTG 4676
>seq856
Length=36659
Score = 98.7 bits (108), Expect = 2e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|| ||||||||||| |||||||| ||||| |||||||| || || || ||||| | ||
Sbjct 5130 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 5071
Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557
|| || ||| || || ||||| || ||||| |||||||| || || || || ||||||
Sbjct 5070 TCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAAATCTGC 5011
Query 104558 AT 104559
||
Sbjct 5010 AT 5009
Score = 98.7 bits (108), Expect = 2e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|| ||||||||||| ||||||||||| ||||||||||| || || || || || | ||||
Sbjct 5398 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 5339
Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557
|| | ||| || ||||| || || ||||| || || || || || ||||| ||||||
Sbjct 5338 TCAGACGCTTCCACTTCTAGGGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 5279
Query 104558 AT 104559
||
Sbjct 5278 AT 5277
Score = 95.1 bits (104), Expect = 3e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
||| ||||||||||| || ||||| || || ||||| ||||| || |||||||| | |||
Sbjct 4859 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 4800
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
||| || || || || || || || || || |||||||| || || || || |||||
Sbjct 4799 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 4740
Query 104557 CATTTTG 104563
||| |||
Sbjct 4739 CATATTG 4733
>seq13147
Length=5676
Score = 95.1 bits (104), Expect = 3e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
||| ||||||||||| || ||||| || || ||||| ||||| || |||||||| | |||
Sbjct 5229 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 5288
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
||| || || || || || || || || || |||||||| || || || || |||||
Sbjct 5289 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 5348
Query 104557 CATTTTG 104563
||| |||
Sbjct 5349 CATATTG 5355
>seq8748
Length=9037
Score = 89.7 bits (98), Expect = 1e-12
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974
|||||| || || || || ||||| | |||||||| ||||| || || ||||| |||||
Sbjct 8252 TCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 8311
Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
|||||||||||| ||||| |||||| |||||||||||
Sbjct 8312 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 8353
>seq1949
Length=26475
Score = 89.7 bits (98), Expect = 1e-12
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974
|||||| || || || || ||||| | |||||||| ||||| || || ||||| |||||
Sbjct 11630 TCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 11689
Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
|||||||||||| ||||| |||||| |||||||||||
Sbjct 11690 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 11731
>seq10756
Length=7202
Score = 87.8 bits (96), Expect = 4e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
||||||||| || || || || || ||||| |||||||| || || |||||||| | ||
Sbjct 4743 CTGTTGATCCGGTGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATCGT 4802
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
||| | || || || || ||||||||||| || || | ||||| ||||| |||||
Sbjct 4803 GTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTTTTGACAAAAATCTG 4862
Query 104557 CAT 104559
|||
Sbjct 4863 CAT 4865
>seq6
Length=123133
Score = 87.8 bits (96), Expect = 4e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975
||||| || || || || ||||| | |||||||| ||||| || || ||||| ||||||
Sbjct 116167 CAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAAT 116108
Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
||||||||||| ||||| |||||| |||||||||||
Sbjct 116107 ATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 116067
>seq13211
Length=5644
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974
|||||| || || || || || || | |||||||| ||||| || || ||||| |||||
Sbjct 4357 TCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 4416
Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
|||||||||||| ||||| |||||| |||||||||||
Sbjct 4417 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 4458
>seq545
Length=42957
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974
|||||| || || || || || || | |||||||| ||||| || || ||||| |||||
Sbjct 28180 TCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 28239
Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
|||||||||||| ||||| |||||| |||||||||||
Sbjct 28240 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 28281
>seq8819
Length=8975
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|| ||||||||||| |||||| |||| ||||||||||| || || || || || | ||||
Sbjct 8679 TGCTGATCAGGAGGAATTCCT-CTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 8737
Query 104498 TCGCTAGGTTCTACCTCTA-GTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
|| | ||| || |||| | || || ||||| || || || || || ||||| |||||
Sbjct 8738 TCAGACGCTTCCACTTCTAGGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTG 8797
Query 104557 CAT 104559
|||
Sbjct 8798 CAT 8800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151011948958768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |