Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq11554 86.0 7e-12
seq7082 82.4 9e-11
seq2703 82.4 9e-11
seq1923 82.4 9e-11
>seq11554
Length=6653
Score = 86.0 bits (94), Expect = 7e-12
Identities = 110/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868
|||| ||||| ||||| || ||| | || |||||||||||||||| || || |||||||
Sbjct 1421 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGAGCATCACCAAGTGTATGAA 1479
Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928
|||||||||| | ||| | | | ||||| || | || || | ||||| ||||
Sbjct 1480 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 1539
Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957
|||| ||| ||||| || ||||| |||
Sbjct 1540 TGGCTATATTGAAAGGAACGCCTAAACCC 1568
>seq7082
Length=11116
Score = 82.4 bits (90), Expect = 9e-11
Identities = 109/149 (73%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868
|||| ||||| ||| | || ||| | || |||||||||||||||| || || |||||||
Sbjct 6465 TTGTGTTTTTAAAGCCTCTAAATG-TGTAGAATAAATATGAGCATCACCAAGTGTATGAA 6407
Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928
|||||||||| | ||| | | | ||||| || | || || | ||||| ||||
Sbjct 6406 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 6347
Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957
|||| ||| ||||| || ||||| |||
Sbjct 6346 TGGCTATATTGAAAGGAACGCCTAAACCC 6318
>seq2703
Length=22513
Score = 82.4 bits (90), Expect = 9e-11
Identities = 109/149 (73%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868
|||| ||||| ||||| || ||| | || |||||||||| ||||| || || |||||||
Sbjct 10892 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGTGCATCACCAAGTGTATGAA 10834
Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928
|||||||||| | ||| | | | ||||| || | || || | ||||| ||||
Sbjct 10833 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 10774
Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957
|||| ||| ||||| || ||||| |||
Sbjct 10773 TGGCTATATTGAAAGGAACGCCTAAACCC 10745
>seq1923
Length=26693
Score = 82.4 bits (90), Expect = 9e-11
Identities = 109/149 (73%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868
|||| ||||| ||||| || ||| | || |||||||||| ||||| || || |||||||
Sbjct 18438 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGTGCATCACCAAGTGTATGAA 18496
Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928
|||||||||| | ||| | | | ||||| || | || || | ||||| ||||
Sbjct 18497 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 18556
Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957
|||| ||| ||||| || ||||| |||
Sbjct 18557 TGGCTATATTGAAAGGAACGCCTAAACCC 18585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595676881713600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |