Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq11554 86.0 7e-12 seq7082 82.4 9e-11 seq2703 82.4 9e-11 seq1923 82.4 9e-11 >seq11554 Length=6653 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868 |||| ||||| ||||| || ||| | || |||||||||||||||| || || ||||||| Sbjct 1421 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGAGCATCACCAAGTGTATGAA 1479 Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928 |||||||||| | ||| | | | ||||| || | || || | ||||| |||| Sbjct 1480 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 1539 Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957 |||| ||| ||||| || ||||| ||| Sbjct 1540 TGGCTATATTGAAAGGAACGCCTAAACCC 1568 >seq7082 Length=11116 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868 |||| ||||| ||| | || ||| | || |||||||||||||||| || || ||||||| Sbjct 6465 TTGTGTTTTTAAAGCCTCTAAATG-TGTAGAATAAATATGAGCATCACCAAGTGTATGAA 6407 Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928 |||||||||| | ||| | | | ||||| || | || || | ||||| |||| Sbjct 6406 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 6347 Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957 |||| ||| ||||| || ||||| ||| Sbjct 6346 TGGCTATATTGAAAGGAACGCCTAAACCC 6318 >seq2703 Length=22513 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868 |||| ||||| ||||| || ||| | || |||||||||| ||||| || || ||||||| Sbjct 10892 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGTGCATCACCAAGTGTATGAA 10834 Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928 |||||||||| | ||| | | | ||||| || | || || | ||||| |||| Sbjct 10833 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 10774 Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957 |||| ||| ||||| || ||||| ||| Sbjct 10773 TGGCTATATTGAAAGGAACGCCTAAACCC 10745 >seq1923 Length=26693 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868 |||| ||||| ||||| || ||| | || |||||||||| ||||| || || ||||||| Sbjct 18438 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGTGCATCACCAAGTGTATGAA 18496 Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928 |||||||||| | ||| | | | ||||| || | || || | ||||| |||| Sbjct 18497 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 18556 Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957 |||| ||| ||||| || ||||| ||| Sbjct 18557 TGGCTATATTGAAAGGAACGCCTAAACCC 18585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595676881713600