Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq659 109 5e-19 seq13147 105 6e-18 seq11515 105 6e-18 seq856 105 6e-18 seq10671 89.7 5e-13 seq8819 86.0 6e-12 >seq659 Length=40447 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| |||||||| |||||||| ||||| ||||| | |||||||||||| ||| || Sbjct 38414 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCG 38473 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| ||||| |||| ||||| ||||||||||||||||| || || ||| Sbjct 38474 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 38533 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 38534 ATCTGCAT 38541 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| || ||||| ||||| || || | ||| || ||||||||| || Sbjct 38143 AATCGTTGCTGATCAGGCGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 38202 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | |||||||| || || || | |||||||| |||||||||||||| || || || Sbjct 38203 ATAGTGTCAGAAGCCTCAACTTCGAGAGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAA 38262 Query 95000 ATCTGCATGC 95009 |||||||||| Sbjct 38263 ATCTGCATGC 38272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 94873 AAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 ||||| |||| ||||||||| ||||| || ||||||||||| | ||| || |||||||| Sbjct 37865 AAAGACCAATCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGAC 37924 Query 94933 GGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTT 94992 | | | || |||| || || || | ||||| || ||||| || || || || Sbjct 37925 GTTTTCAATGGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTT 37984 Query 94993 CACAAAGATCTGCAT 95007 ||||||||||||||| Sbjct 37985 CACAAAGATCTGCAT 37999 >seq13147 Length=5676 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| |||||||| |||||||| ||||| ||||| | |||||||||||| || || Sbjct 5224 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 5283 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| ||||| |||| ||||| ||||||||||||||||| || || ||| Sbjct 5284 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 5343 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 5344 ATCTGCAT 5351 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| ||||| || || | ||| || ||||||||| ||| |||| Sbjct 4959 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 5018 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | ||||||||| ||||| ||| Sbjct 5019 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 5078 Query 95006 AT 95007 || Sbjct 5079 AT 5080 >seq11515 Length=6677 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| |||||||| |||||||| ||||| ||||| | |||||||||||| || || Sbjct 4807 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 4748 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| ||||| |||| ||||| ||||||||||||||||| || || ||| Sbjct 4747 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 4688 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 4687 ATCTGCAT 4680 Score = 104 bits (114), Expect = 2e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||| || || | ||| || ||||||||| || Sbjct 5409 AATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5350 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | |||||||| || || || | |||||||| |||||||||||||| || || || Sbjct 5349 ATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACTAAA 5290 Query 95000 ATCTGCATGC 95009 |||||||||| Sbjct 5289 ATCTGCATGC 5280 Score = 102 bits (112), Expect = 7e-17 Identities = 102/131 (78%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC-C 94938 |||| ||||||||| |||||||| ||||| || || | ||| || ||||||||| | Sbjct 5079 AATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTTC 5020 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || |||||||| || || || | |||||||| |||||||||||||| || ||||| Sbjct 5019 GATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAA 4960 Query 94999 GATCTGCATGC 95009 |||||||||| Sbjct 4959 AATCTGCATGC 4949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||||||||| | ||| || ||||||||| | Sbjct 5677 AATCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCA 5618 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| || || || | ||||| || ||||| || || || ||||||||| Sbjct 5617 ATGGTATCAGACGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 5558 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 5557 ATCTGCAT 5550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| ||||| || || | ||| || ||||||||| ||| |||| Sbjct 5944 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 5885 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | ||||||||| ||||| ||| Sbjct 5884 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 5825 Query 95006 AT 95007 || Sbjct 5824 AT 5823 >seq856 Length=36659 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| |||||||| |||||||| ||||| ||||| | |||||||||||| || || Sbjct 4864 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 4805 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| ||||| |||| ||||| ||||||||||||||||| || || ||| Sbjct 4804 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 4745 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 4744 ATCTGCAT 4737 Score = 104 bits (114), Expect = 2e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||| || || | ||| || ||||||||| || Sbjct 5136 AATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5077 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | |||||||| || || || | |||||||| |||||||||||||| || || || Sbjct 5076 ATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAA 5017 Query 95000 ATCTGCATGC 95009 |||||||||| Sbjct 5016 ATCTGCATGC 5007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||||||||| | ||| || ||||||||| | Sbjct 5404 AATCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCA 5345 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| || || || | ||||| || ||||| || || || ||||||||| Sbjct 5344 ATGGTATCAGACGCTTCCACTTCTAGGGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 5285 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 5284 ATCTGCAT 5277 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| ||||| || || | ||| || ||||||||| ||| |||| Sbjct 5671 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 5612 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | ||||||||| ||||| ||| Sbjct 5611 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 5552 Query 95006 AT 95007 || Sbjct 5551 AT 5550 >seq10671 Length=7258 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| || || ||||| | |||||| |||||||| | | ||| Sbjct 4113 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTG 4054 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || |||| || || || |||||||| |||||||| |||||||||||| Sbjct 4053 TCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTGC 3994 Query 95006 AT 95007 || Sbjct 3993 AT 3992 >seq8819 Length=8975 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| ||||| ||||| | |||||| |||||||| | | |||| Sbjct 8408 TGCTGATCTGGTGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTTTCTATAGTG 8467 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | ||||||||| ||||| ||| Sbjct 8468 TCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 8527 Query 95006 AT 95007 || Sbjct 8528 AT 8529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448144407046560