Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq3673 114 2e-21
seq3033 114 2e-21
seq316 114 2e-21
seq5173 111 2e-20
seq3221 111 2e-20
seq2054 111 2e-20
seq3118 109 9e-20
seq19329 107 3e-19
seq132 107 3e-19
seq4995 105 1e-18
seq31 105 1e-18
>seq3673
Length=18777
Score = 114 bits (126), Expect = 2e-21
Identities = 114/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||||||||| | | |||| || ||||||||||||||||| ||||| || || |
Sbjct 9787 CGCCAAGCGTCATCGAAAAG-TCTTGCGTGATAACATCCAAGGAATTACCAAACCGGCAA 9729
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
||||||| |||| |||||||||||||| |||||| | || || | | || || ||||
Sbjct 9728 TCCGTCGATTGGCACGTCGTGGTGGAGTGAAGCGTATTTCCGGGCTCATTTACGAGGAGA 9669
Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| |||| |||||||
Sbjct 9668 CTCGAGGTGTTCTGAAAGTCTTCCT 9644
>seq3033
Length=21104
Score = 114 bits (126), Expect = 2e-21
Identities = 114/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | | |||| || ||||||||||| |||||||||||||| || |
Sbjct 11186 CGCAAAGCGTCACCGAAAAG-TCTTGCGTGATAACATCCAGGGAATCACCAAGCCGGCAA 11244
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
||||||| ||||| |||||||||||||| || ||| | || || | | || || ||||
Sbjct 11245 TCCGTCGACTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 11304
Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| |||| |||||||
Sbjct 11305 CTCGAGGTGTTCTGAAAGTCTTCCT 11329
>seq316
Length=51107
Score = 114 bits (126), Expect = 2e-21
Identities = 114/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | | |||| || |||||||||||||||||||||||||| || |
Sbjct 15064 CGCAAAGCGTCACCGAA-AGGTCTTGCGGGATAACATCCAAGGAATCACCAAGCCGGCAA 15122
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| ||||| |||| |||||||||||||| || ||| | || || | | ||||| ||||
Sbjct 15123 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTATGAGGAGA 15182
Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| |||| |||||||
Sbjct 15183 CTCGAGGTGTTCTGAAAGTCTTCCT 15207
>seq5173
Length=14561
Score = 111 bits (122), Expect = 2e-20
Identities = 113/145 (78%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | | |||| || ||||||||||||||||| |||||||| || |
Sbjct 2483 CGCAAAGCGTCACCGAA-AGGTCTTGCGTGATAACATCCAAGGAATTACCAAGCCGGCAA 2541
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| ||||| |||| |||||||||||||| || ||| | || ||| | | || || ||||
Sbjct 2542 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGACTCATTTACGAGGAGA 2601
Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| |||| |||||||
Sbjct 2602 CTCGAGGTGTTCTGAAAGTCTTCCT 2626
>seq3221
Length=20295
Score = 111 bits (122), Expect = 2e-20
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| ||||| | | | | || |||||||||||||||||||| ||||| || ||
Sbjct 10132 CGCTAAGCGCCATCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 10191
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| |||| || ||||||||||| || ||| | || || | | || || ||||
Sbjct 10192 CCGTCGATTGGCACGCCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 10251
Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| |||| |||||||
Sbjct 10252 TCGAGGTGTTCTGAAAGTCTTCCT 10275
>seq2054
Length=25817
Score = 111 bits (122), Expect = 2e-20
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || || | | | | || |||||||||||||||||||| ||||| || ||
Sbjct 20429 CGCTAAGCGCCACCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 20488
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| |||| |||||||||||||| || ||| | || || | | || || ||||
Sbjct 20489 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 20548
Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| |||| |||||||
Sbjct 20549 TCGAGGTGTTCTGAAAGTCTTCCT 20572
>seq3118
Length=20727
Score = 109 bits (120), Expect = 9e-20
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| |||||||||||||||||||||||||| || |||||||| |||| ||||||||||||
Sbjct 1499 CGTGATAACATCCAAGGAATCACCAAGCCGGCAATCCGTCGATTGGCACGTCGTGGTGGA 1440
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| || ||| | || || | | || || |||| ||| | |||| |||| |||||||
Sbjct 1439 GTGAAACGTATTTCCGGGCTCATTTACGAGGAGACTCGAGGTGTTCTGAAAGTCTTCCTT 1380
Query 16577 AAGACCGTTATCCATGATGC 16596
| | || |||| ||| ||
Sbjct 1379 GAAAATGTGATCCGTGACGC 1360
>seq19329
Length=3372
Score = 107 bits (118), Expect = 3e-19
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || | | | | | || |||||||||||||||||||| ||||| || ||
Sbjct 2477 CGCTAAGCGCCACAGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 2418
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| |||| |||||||||||||| || ||| | || || | | || || ||||
Sbjct 2417 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 2358
Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| |||| |||||||
Sbjct 2357 TCGAGGTGTTCTGAAAGTCTTCCT 2334
>seq132
Length=62948
Score = 107 bits (118), Expect = 3e-19
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || || | | | | || |||||||||||||||||||| ||||| || ||
Sbjct 59437 CGCTAAGCGCCACCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 59496
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||| | |||| |||||||||||||| || ||| | || || | | || || ||||
Sbjct 59497 CCGTAGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 59556
Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| |||| |||||||
Sbjct 59557 TCGAGGTGTTCTGAAAGTCTTCCT 59580
>seq4995
Length=14946
Score = 105 bits (116), Expect = 1e-18
Identities = 112/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||||||||| || || | | |||| || ||||||||||||||||||||||| || || |
Sbjct 5611 CGCTAAGCGCCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACCAAACCGGCAA 5669
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || |||| |||||||||||||| || ||| | || || | | || || ||||
Sbjct 5670 TCCGGCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 5729
Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| |||| |||||||
Sbjct 5730 CTCGAGGTGTTCTGAAAGTCTTCCT 5754
>seq31
Length=86748
Score = 105 bits (116), Expect = 1e-18
Identities = 112/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | | |||| || |||||||||||||||||||| ||||| || |
Sbjct 41319 CGCGAAGCGTCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAA 41261
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| ||||| |||| |||||||||||||| || ||| | || ||| | | || || ||||
Sbjct 41260 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGACTCATTTACGAGGAGA 41201
Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| |||| | |||||
Sbjct 41200 CTCGAGGTGTTCTGAAAGTTTTCCT 41176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79051248813828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |