Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3673 114 2e-21 seq3033 114 2e-21 seq316 114 2e-21 seq5173 111 2e-20 seq3221 111 2e-20 seq2054 111 2e-20 seq3118 109 9e-20 seq19329 107 3e-19 seq132 107 3e-19 seq4995 105 1e-18 seq31 105 1e-18 >seq3673 Length=18777 Score = 114 bits (126), Expect = 2e-21 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||| | | |||| || ||||||||||||||||| ||||| || || | Sbjct 9787 CGCCAAGCGTCATCGAAAAG-TCTTGCGTGATAACATCCAAGGAATTACCAAACCGGCAA 9729 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||| |||| |||||||||||||| |||||| | || || | | || || |||| Sbjct 9728 TCCGTCGATTGGCACGTCGTGGTGGAGTGAAGCGTATTTCCGGGCTCATTTACGAGGAGA 9669 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 9668 CTCGAGGTGTTCTGAAAGTCTTCCT 9644 >seq3033 Length=21104 Score = 114 bits (126), Expect = 2e-21 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || ||||||||||| |||||||||||||| || | Sbjct 11186 CGCAAAGCGTCACCGAAAAG-TCTTGCGTGATAACATCCAGGGAATCACCAAGCCGGCAA 11244 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||| ||||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 11245 TCCGTCGACTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 11304 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 11305 CTCGAGGTGTTCTGAAAGTCTTCCT 11329 >seq316 Length=51107 Score = 114 bits (126), Expect = 2e-21 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || |||||||||||||||||||||||||| || | Sbjct 15064 CGCAAAGCGTCACCGAA-AGGTCTTGCGGGATAACATCCAAGGAATCACCAAGCCGGCAA 15122 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| |||| |||||||||||||| || ||| | || || | | ||||| |||| Sbjct 15123 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTATGAGGAGA 15182 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 15183 CTCGAGGTGTTCTGAAAGTCTTCCT 15207 >seq5173 Length=14561 Score = 111 bits (122), Expect = 2e-20 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || ||||||||||||||||| |||||||| || | Sbjct 2483 CGCAAAGCGTCACCGAA-AGGTCTTGCGTGATAACATCCAAGGAATTACCAAGCCGGCAA 2541 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| |||| |||||||||||||| || ||| | || ||| | | || || |||| Sbjct 2542 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGACTCATTTACGAGGAGA 2601 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 2602 CTCGAGGTGTTCTGAAAGTCTTCCT 2626 >seq3221 Length=20295 Score = 111 bits (122), Expect = 2e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | | | | || |||||||||||||||||||| ||||| || || Sbjct 10132 CGCTAAGCGCCATCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 10191 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| || ||||||||||| || ||| | || || | | || || |||| Sbjct 10192 CCGTCGATTGGCACGCCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 10251 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 10252 TCGAGGTGTTCTGAAAGTCTTCCT 10275 >seq2054 Length=25817 Score = 111 bits (122), Expect = 2e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | | | || |||||||||||||||||||| ||||| || || Sbjct 20429 CGCTAAGCGCCACCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 20488 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 20489 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 20548 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 20549 TCGAGGTGTTCTGAAAGTCTTCCT 20572 >seq3118 Length=20727 Score = 109 bits (120), Expect = 9e-20 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||||||||||||||| || |||||||| |||| |||||||||||| Sbjct 1499 CGTGATAACATCCAAGGAATCACCAAGCCGGCAATCCGTCGATTGGCACGTCGTGGTGGA 1440 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| | || || | | || || |||| ||| | |||| |||| ||||||| Sbjct 1439 GTGAAACGTATTTCCGGGCTCATTTACGAGGAGACTCGAGGTGTTCTGAAAGTCTTCCTT 1380 Query 16577 AAGACCGTTATCCATGATGC 16596 | | || |||| ||| || Sbjct 1379 GAAAATGTGATCCGTGACGC 1360 >seq19329 Length=3372 Score = 107 bits (118), Expect = 3e-19 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || | | | | | || |||||||||||||||||||| ||||| || || Sbjct 2477 CGCTAAGCGCCACAGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 2418 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 2417 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 2358 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 2357 TCGAGGTGTTCTGAAAGTCTTCCT 2334 >seq132 Length=62948 Score = 107 bits (118), Expect = 3e-19 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | | | || |||||||||||||||||||| ||||| || || Sbjct 59437 CGCTAAGCGCCACCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 59496 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 59497 CCGTAGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 59556 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 59557 TCGAGGTGTTCTGAAAGTCTTCCT 59580 >seq4995 Length=14946 Score = 105 bits (116), Expect = 1e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | | |||| || ||||||||||||||||||||||| || || | Sbjct 5611 CGCTAAGCGCCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACCAAACCGGCAA 5669 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 5670 TCCGGCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 5729 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 5730 CTCGAGGTGTTCTGAAAGTCTTCCT 5754 >seq31 Length=86748 Score = 105 bits (116), Expect = 1e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || |||||||||||||||||||| ||||| || | Sbjct 41319 CGCGAAGCGTCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAA 41261 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| |||| |||||||||||||| || ||| | || ||| | | || || |||| Sbjct 41260 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGACTCATTTACGAGGAGA 41201 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| | ||||| Sbjct 41200 CTCGAGGTGTTCTGAAAGTTTTCCT 41176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79051248813828