Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq13211 107 2e-18 seq8748 104 2e-17 seq1949 104 2e-17 seq6 98.7 1e-15 seq545 95.1 1e-14 >seq13211 Length=5644 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||| |||||||| | ||| | |||||||| | | |||||||||||| ||| Sbjct 4774 AAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTC 4715 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 | || ||||| || || | || |||| |||||| |||| ||||| ||| |||||| Sbjct 4714 AGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAG 4655 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || |||||||| || ||||| |||| | |||||||| ||| || ||||||| Sbjct 4654 AATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTA 4598 >seq8748 Length=9037 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||| |||||||| | ||| | |||||||| | | |||||||||||| ||| Sbjct 8664 AAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTC 8605 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 | || ||||| || || | || |||| |||||| |||| ||||| ||| || ||| Sbjct 8604 AGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAG 8545 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || |||||||| || ||||| |||| | |||||||| ||| || ||||||| Sbjct 8544 AATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTA 8488 >seq1949 Length=26475 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||| |||||||| | ||| | |||||||| | | |||||||||||| ||| Sbjct 12042 AAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTC 11983 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 | || ||||| || || | || |||| |||||| |||| ||||| ||| || ||| Sbjct 11982 AGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAG 11923 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || |||||||| || ||||| |||| | |||||||| ||| || ||||||| Sbjct 11922 AATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTA 11866 >seq6 Length=123133 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||| |||||||| | ||| | |||||||| | | |||||||||||| ||| Sbjct 115758 AAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTC 115817 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 | || ||||| || || | || |||| |||||| |||| ||||| ||| || ||| Sbjct 115818 AGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAG 115877 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || |||||||| | ||||| |||| | |||||||| ||| || ||||||| Sbjct 115878 AATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTA 115934 >seq545 Length=42957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||| |||||||| | ||| | |||||||| | | |||||||||||| ||| | Sbjct 28596 ACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAG 28537 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| | || | || |||| |||||| |||| ||||| ||| || ||||| Sbjct 28536 TCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAA 28477 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || |||||||| || ||||| |||| | |||||||| ||| || ||||||| Sbjct 28476 TATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTA 28422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531726629083040