Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq554 113 6e-20 seq668 111 2e-19 seq865 102 1e-16 seq21 98.7 1e-15 >seq554 Length=42686 Score = 113 bits (124), Expect = 6e-20 Identities = 197/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 15020 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 15079 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | | Sbjct 15080 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 15139 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 ||||| || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 15140 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 15199 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 15200 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 15259 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 15260 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 15306 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 16338 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 16397 Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 16398 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 16457 Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106 | || |||||||||||| |||| || ||| Sbjct 16458 CAACAGTTGTTACTCCAGTATAAATGCCT 16486 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| ||||| || || || ||||| ||| | | |||||||| Sbjct 10044 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 10103 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 10104 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 10163 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 10164 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 10223 Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230 | |||||| || || ||||||||||| Sbjct 10224 TTGTATAAAGCT---TTGATATCTTCTGG 10249 >seq668 Length=40291 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 |||| | ||||| || |||||||| |||||||| || || |||||||| || || | | Sbjct 30026 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 30085 Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 30086 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 30145 Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106 | || |||||||||||| |||| || ||| Sbjct 30146 CAACAGTTGTTACTCCAGTATAAATGCCT 30174 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| ||||| ||||| || ||||| ||| | | |||||||| Sbjct 24055 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 24114 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 24115 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 24174 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | ||| | |||||||| ||||| ||||||||||||||||| |||| Sbjct 24175 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 24234 Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230 | |||||| || || ||||||||||| Sbjct 24235 TTGTATAAAGCT---TTGATATCTTCTGG 24260 Score = 98.7 bits (108), Expect = 1e-15 Identities = 194/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || || ||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 28603 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 28662 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | Sbjct 28663 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 28722 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 28723 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 28782 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 28783 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 28842 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 28843 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 28889 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 63705 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 63764 || ||||| || || |||||||| ||||| ||||| || || ||||| | || || Sbjct 29103 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 29162 Query 63765 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 63823 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 29163 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 29221 Query 63824 TCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 || || ||||||||||| || |||||||| Sbjct 29222 ACGATCATAAATAATAACTGAATTGAGTTT 29251 >seq865 Length=36480 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 36198 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 36257 Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 36258 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 36317 Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106 | || |||||||||||| |||| || ||| Sbjct 36318 CAACAGTTGTTACTCCAGTATAAATGCCT 36346 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| |||||||||||||| ||||| ||| | | |||||||| Sbjct 30177 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 30236 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 30237 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 30296 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | || | |||||||| || || ||||||||||||||||| |||| Sbjct 30297 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 30356 Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230 | |||||| || || ||||||||||| Sbjct 30357 TTGTATAAAGCT---TTGATATCTTCTGG 30382 Score = 98.7 bits (108), Expect = 1e-15 Identities = 194/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 34578 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 34637 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | | Sbjct 34638 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 34697 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 34698 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 34757 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 34758 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 34817 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 34818 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 34864 >seq21 Length=96658 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| |||||||| ||||| ||||| ||| | | |||||||| Sbjct 32394 GTACGCAAATAATACATTCCTGTTTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 32335 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 32334 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 32275 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 32274 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 32215 Query 62205 TT--ATAAACTCGCTTA-ATATCTTCTGG 62230 || ||||| |||| ||||||||||| Sbjct 32214 TTGTATAAA---GCTTTGATATCTTCTGG 32189 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 63966 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 ||||| ||||| ||||| |||||||| || || |||||||| || || | |||||||| Sbjct 26531 TTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAGCATAATCT 26472 Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085 || || ||||||| | || || | ||| || |||| | | ||||| || || ||| Sbjct 26471 GGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAACTCAACAGTT 26412 Query 64086 GTTACTCCATTATATATTCCT 64106 ||||||||| |||| || ||| Sbjct 26411 GTTACTCCAGTATAAATGCCT 26391 Score = 86.0 bits (94), Expect = 8e-12 Identities = 191/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || || ||||||||||| || || | || |||| ||||| |||||||||||| Sbjct 28139 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGTAACATTGGAATA 28080 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | | Sbjct 28079 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 28020 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || || || || ||||| || ||| ||| ||||| | || || || || | || ||| Sbjct 28019 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAGCGATTAATTGTTTCA 27960 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| || | || || Sbjct 27959 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAGGAAAGCTGTGGA 27900 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 27899 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 27853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622743215939360