Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq554 113 6e-20
seq668 111 2e-19
seq865 102 1e-16
seq21 98.7 1e-15
>seq554
Length=42686
Score = 113 bits (124), Expect = 6e-20
Identities = 197/287 (69%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 15020 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 15079
Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485
|| || || || | ||||| || || ||||| | || |||||||| | |
Sbjct 15080 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 15139
Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545
||||| || || ||||| || ||| ||| ||||| | || || || |||| || |||
Sbjct 15140 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 15199
Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 15200 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 15259
Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 15260 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 15306
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017
|||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | |
Sbjct 16338 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 16397
Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077
||||||| || || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 16398 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 16457
Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106
| || |||||||||||| |||| || |||
Sbjct 16458 CAACAGTTGTTACTCCAGTATAAATGCCT 16486
Score = 89.7 bits (98), Expect = 6e-13
Identities = 147/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084
||||| | ||| ||||| || || || ||||| ||| | | ||||||||
Sbjct 10044 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 10103
Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 10104 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 10163
Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 10164 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 10223
Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230
| |||||| || || |||||||||||
Sbjct 10224 TTGTATAAAGCT---TTGATATCTTCTGG 10249
>seq668
Length=40291
Score = 111 bits (122), Expect = 2e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017
|||| | ||||| || |||||||| |||||||| || || |||||||| || || | |
Sbjct 30026 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 30085
Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077
|||||||||| || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 30086 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 30145
Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106
| || |||||||||||| |||| || |||
Sbjct 30146 CAACAGTTGTTACTCCAGTATAAATGCCT 30174
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084
||||| | ||| ||||| ||||| || ||||| ||| | | ||||||||
Sbjct 24055 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 24114
Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 24115 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 24174
Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204
|| | | | ||| | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 24175 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 24234
Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230
| |||||| || || |||||||||||
Sbjct 24235 TTGTATAAAGCT---TTGATATCTTCTGG 24260
Score = 98.7 bits (108), Expect = 1e-15
Identities = 194/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425
|| || ||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 28603 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 28662
Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485
|| || || || | ||||| || || ||||| | || |||||||| |
Sbjct 28663 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 28722
Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545
|| || || || ||||| || ||| ||| ||||| | || || || |||| || |||
Sbjct 28723 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 28782
Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 28783 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 28842
Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 28843 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 28889
Score = 93.3 bits (102), Expect = 5e-14
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 63705 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 63764
|| ||||| || || |||||||| ||||| ||||| || || ||||| | || ||
Sbjct 29103 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 29162
Query 63765 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 63823
||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| ||
Sbjct 29163 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 29221
Query 63824 TCGTTCGTAAATAATAACCGAGTTGAGTTT 63853
|| || ||||||||||| || ||||||||
Sbjct 29222 ACGATCATAAATAATAACTGAATTGAGTTT 29251
>seq865
Length=36480
Score = 102 bits (112), Expect = 1e-16
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017
|||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | |
Sbjct 36198 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 36257
Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077
||||||| || || ||||||| | || || | ||| || |||| | | |||||||
Sbjct 36258 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 36317
Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106
| || |||||||||||| |||| || |||
Sbjct 36318 CAACAGTTGTTACTCCAGTATAAATGCCT 36346
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084
||||| | ||| |||||||||||||| ||||| ||| | | ||||||||
Sbjct 30177 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 30236
Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 30237 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 30296
Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204
|| | | | || | |||||||| || || ||||||||||||||||| ||||
Sbjct 30297 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 30356
Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230
| |||||| || || |||||||||||
Sbjct 30357 TTGTATAAAGCT---TTGATATCTTCTGG 30382
Score = 98.7 bits (108), Expect = 1e-15
Identities = 194/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 34578 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 34637
Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485
|| || || || | ||||| || || ||||| | || |||||||| | |
Sbjct 34638 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 34697
Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545
|| || || || ||||| || ||| ||| || || | || || || || | || |||
Sbjct 34698 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 34757
Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 34758 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 34817
Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 34818 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 34864
>seq21
Length=96658
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084
||||| | ||| |||||||| ||||| ||||| ||| | | ||||||||
Sbjct 32394 GTACGCAAATAATACATTCCTGTTTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 32335
Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 32334 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 32275
Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 32274 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 32215
Query 62205 TT--ATAAACTCGCTTA-ATATCTTCTGG 62230
|| ||||| |||| |||||||||||
Sbjct 32214 TTGTATAAA---GCTTTGATATCTTCTGG 32189
Score = 96.9 bits (106), Expect = 4e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 63966 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025
||||| ||||| ||||| |||||||| || || |||||||| || || | ||||||||
Sbjct 26531 TTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAGCATAATCT 26472
Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085
|| || ||||||| | || || | ||| || |||| | | ||||| || || |||
Sbjct 26471 GGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAACTCAACAGTT 26412
Query 64086 GTTACTCCATTATATATTCCT 64106
||||||||| |||| || |||
Sbjct 26411 GTTACTCCAGTATAAATGCCT 26391
Score = 86.0 bits (94), Expect = 8e-12
Identities = 191/287 (67%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425
|| || ||||||||||| || || | || |||| ||||| ||||||||||||
Sbjct 28139 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGTAACATTGGAATA 28080
Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485
|| || || || | ||||| || || ||||| | || |||||||| | |
Sbjct 28079 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 28020
Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545
|| || || || ||||| || ||| ||| ||||| | || || || || | || |||
Sbjct 28019 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAGCGATTAATTGTTTCA 27960
Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605
| || || || || ||| | | ||| ||| | |||||| || | || ||
Sbjct 27959 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAGGAAAGCTGTGGA 27900
Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 27899 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 27853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622743215939360
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