Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq13211 118 3e-21 seq1949 113 1e-19 seq554 91.5 4e-13 >seq13211 Length=5644 Score = 118 bits (130), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGA-TG--AACAATGAACGTTCATTCGCG 22488 || ||||| || || |||||||| || |||| || | || ||| |||||| | Sbjct 4557 ATCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGT 4616 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||||| ||||| ||||| | ||||| || || |||||||||||| ||| |||| Sbjct 4617 GAACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCA 4676 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || ||||||||||| ||||| | ||||||| || || || ||||| |||||| Sbjct 4677 ATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATT 4736 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 |||||||| || |||||| |||||||| ||| Sbjct 4737 TCTCGAGATGAAGGACTTCATCGAGATTTTGCTTGT 4772 >seq1949 Length=26475 Score = 113 bits (124), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGA-TG--AACAATGAACGTTCATTCGCG 22488 || ||||| || || |||||||| || |||| || | || ||| |||||| | Sbjct 11825 ATCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGT 11884 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||||||||||| ||||| | ||||| || || ||||| |||||| ||| |||| Sbjct 11885 GAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCA 11944 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || ||||||||||| ||||| | ||||||| || || || ||||| |||||| Sbjct 11945 ATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATT 12004 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 || ||||| || |||||| |||||||| ||| Sbjct 12005 TCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGT 12040 >seq554 Length=42686 Score = 91.5 bits (100), Expect = 4e-13 Identities = 179/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 364896 CGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAA 364955 ||| || |||| |||| |||||||| | | || | | | |||||||| || || Sbjct 10322 CGGTCTCTGGGATGACCAAATGAAGAATCGTTTAATATCTGATGGAGGTTCTGTCCAAAA 10263 Query 364956 CATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC-- 365013 ||| ||||| ||||||||| | || || | |||||||| || ||||||||| | Sbjct 10262 TATTGTTGGATTGCCAGAAGATATCAAAGCTTTATACAAAACTGTTTGGGAAATTCCACA 10203 Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073 | | ||| || || | ||||| | ||||| | | |||||||| || || || || Sbjct 10202 ACGTGAAATC--ATCAAAATGGCAGTTGATCGAGCTCCTTTTATCGACCAAAGTCAATCT 10145 Query 365074 TTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG 365133 || || || || || | ||||| | || || |||| || |||||||||| | Sbjct 10144 TTAAATTTACATATTGCTGATCCAACATATGCAAAAATTACCTCAATGCATTTCTTTGCT 10085 Query 365134 TGGAAATCCGGTCTTAAGACAGG 365156 ||| || |||||||||||||| Sbjct 10084 TGGGAAAATGGTCTTAAGACAGG 10062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302916147285272