Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq13211 118 3e-21
seq1949 113 1e-19
seq554 91.5 4e-13
>seq13211
Length=5644
Score = 118 bits (130), Expect = 3e-21
Identities = 157/216 (73%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGA-TG--AACAATGAACGTTCATTCGCG 22488
|| ||||| || || |||||||| || |||| || | || ||| |||||| |
Sbjct 4557 ATCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGT 4616
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||||| ||||| ||||| | ||||| || || |||||||||||| ||| ||||
Sbjct 4617 GAACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCA 4676
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| ||||||||||| ||||| | ||||||| || || || ||||| ||||||
Sbjct 4677 ATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATT 4736
Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644
|||||||| || |||||| |||||||| |||
Sbjct 4737 TCTCGAGATGAAGGACTTCATCGAGATTTTGCTTGT 4772
>seq1949
Length=26475
Score = 113 bits (124), Expect = 1e-19
Identities = 156/216 (72%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGA-TG--AACAATGAACGTTCATTCGCG 22488
|| ||||| || || |||||||| || |||| || | || ||| |||||| |
Sbjct 11825 ATCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGT 11884
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||||||||||| ||||| | ||||| || || ||||| |||||| ||| ||||
Sbjct 11885 GAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCA 11944
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| ||||||||||| ||||| | ||||||| || || || ||||| ||||||
Sbjct 11945 ATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATT 12004
Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644
|| ||||| || |||||| |||||||| |||
Sbjct 12005 TCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGT 12040
>seq554
Length=42686
Score = 91.5 bits (100), Expect = 4e-13
Identities = 179/263 (68%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 364896 CGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAA 364955
||| || |||| |||| |||||||| | | || | | | |||||||| || ||
Sbjct 10322 CGGTCTCTGGGATGACCAAATGAAGAATCGTTTAATATCTGATGGAGGTTCTGTCCAAAA 10263
Query 364956 CATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC-- 365013
||| ||||| ||||||||| | || || | |||||||| || ||||||||| |
Sbjct 10262 TATTGTTGGATTGCCAGAAGATATCAAAGCTTTATACAAAACTGTTTGGGAAATTCCACA 10203
Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073
| | ||| || || | ||||| | ||||| | | |||||||| || || || ||
Sbjct 10202 ACGTGAAATC--ATCAAAATGGCAGTTGATCGAGCTCCTTTTATCGACCAAAGTCAATCT 10145
Query 365074 TTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG 365133
|| || || || || | ||||| | || || |||| || |||||||||| |
Sbjct 10144 TTAAATTTACATATTGCTGATCCAACATATGCAAAAATTACCTCAATGCATTTCTTTGCT 10085
Query 365134 TGGAAATCCGGTCTTAAGACAGG 365156
||| || ||||||||||||||
Sbjct 10084 TGGGAAAATGGTCTTAAGACAGG 10062
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302916147285272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |