Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq8819 84.2 2e-11 seq8172 84.2 2e-11 seq4503 84.2 2e-11 >seq8819 Length=8975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 8/130 (6%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || |||||||| || || | ||||| ||||||| ||| | || Sbjct 8530 AATGCAAATCTTCGTGAAAACTTTGACTGGGAAGACTATCACCCTCGAAGTTGAGGCATC 8471 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||||||| || |||| | || |||| ||| ||||| ||||| |||||||| | Sbjct 8470 TGACACTATAGAAAATGTCA---AGGCCAAAATTCA-GGACAAGGAAGGCATTCCACCAG 8415 Query 25114 ACCAACAGCG 25123 | || ||||| Sbjct 8414 ATCAGCAGCG 8405 >seq8172 Length=9710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 8/130 (6%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || | ||||| ||||||| ||| | || Sbjct 9553 AATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTCGAAGTTGAGGCATC 9494 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || |||| |||| |||| ||| |||||||| ||||||||||| | Sbjct 9493 GGATACGATTGAAAACGTCA---AAGCCAAAATTCAA-GACAAAGAGGGGATTCCACCAG 9438 Query 25114 ACCAACAGCG 25123 |||| ||||| Sbjct 9437 ACCAGCAGCG 9428 >seq4503 Length=16266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 8/130 (6%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || | ||||| ||||||| ||| | || Sbjct 8214 AATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTCGAAGTTGAGGCATC 8273 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || |||| |||| |||| ||| |||||||| ||||||||||| | Sbjct 8274 GGATACGATTGAAAACGTCA---AAGCCAAAATTCAA-GACAAAGAGGGGATTCCACCAG 8329 Query 25114 ACCAACAGCG 25123 |||| ||||| Sbjct 8330 ACCAGCAGCG 8339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433189654077740