Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq8819 84.2 2e-11
seq8172 84.2 2e-11
seq4503 84.2 2e-11
>seq8819
Length=8975
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 8/130 (6%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || || |||||||| || || | ||||| ||||||| ||| | ||
Sbjct 8530 AATGCAAATCTTCGTGAAAACTTTGACTGGGAAGACTATCACCCTCGAAGTTGAGGCATC 8471
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
||||||||| || |||| | || |||| ||| ||||| ||||| |||||||| |
Sbjct 8470 TGACACTATAGAAAATGTCA---AGGCCAAAATTCA-GGACAAGGAAGGCATTCCACCAG 8415
Query 25114 ACCAACAGCG 25123
| || |||||
Sbjct 8414 ATCAGCAGCG 8405
>seq8172
Length=9710
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 8/130 (6%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || ||||| ||||| || || | ||||| ||||||| ||| | ||
Sbjct 9553 AATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTCGAAGTTGAGGCATC 9494
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| || || || |||| |||| |||| ||| |||||||| ||||||||||| |
Sbjct 9493 GGATACGATTGAAAACGTCA---AAGCCAAAATTCAA-GACAAAGAGGGGATTCCACCAG 9438
Query 25114 ACCAACAGCG 25123
|||| |||||
Sbjct 9437 ACCAGCAGCG 9428
>seq4503
Length=16266
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 8/130 (6%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || ||||| ||||| || || | ||||| ||||||| ||| | ||
Sbjct 8214 AATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTCGAAGTTGAGGCATC 8273
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| || || || |||| |||| |||| ||| |||||||| ||||||||||| |
Sbjct 8274 GGATACGATTGAAAACGTCA---AAGCCAAAATTCAA-GACAAAGAGGGGATTCCACCAG 8329
Query 25114 ACCAACAGCG 25123
|||| |||||
Sbjct 8330 ACCAGCAGCG 8339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433189654077740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |