Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq13211 118 1e-21 seq1949 109 6e-19 seq8748 104 3e-17 seq545 102 9e-17 seq6 95.1 1e-14 >seq13211 Length=5644 Score = 118 bits (130), Expect = 1e-21 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || ||||| || ||| | ||||| ||||| || || || ||||| || ||| Sbjct 4775 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 4716 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | | || |||||||| |||||||| |||| ||||||||| |||||||| Sbjct 4715 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAA 4656 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||||| || || |||||||| || | | |||||| |||| || ||||| Sbjct 4655 GAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 4596 Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310 || | |||| | ||||||||| ||||||||||| ||| || Sbjct 4595 AGCAG-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 4553 >seq1949 Length=26475 Score = 109 bits (120), Expect = 6e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || ||||| || ||| | ||||| || || || || || ||||| || ||| Sbjct 12043 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 11984 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | | || |||||||| |||||||| |||| ||||||||| ||||| || Sbjct 11983 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 11924 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||||| || || || ||||| || | || |||||| |||| || ||||| Sbjct 11923 GAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTACT 11864 Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310 || | |||| | ||||||||| ||||||||||| ||| || Sbjct 11863 AGCAG-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 11821 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || ||||| ||||| ||||||||||| ||||| | ||| || || |||||||| Sbjct 11731 ATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTGA 11672 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468 ||||| || ||||| | |||||| | || || |||||||||| ||| Sbjct 11671 AATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAA 11625 >seq8748 Length=9037 Score = 104 bits (114), Expect = 3e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || ||||| || ||| | ||||| || || || || || ||||| || ||| Sbjct 8665 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 8606 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | | || |||||||| |||||||| |||| ||||||||| ||||| || Sbjct 8605 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 8546 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||||| || || || ||||| || | | |||||| |||| || ||||| Sbjct 8545 GAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 8486 Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310 || | |||| | ||||||||| ||||||||||| ||| || Sbjct 8485 AGCAG-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 8443 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || ||||| ||||| ||||||||||| ||||| | ||| || || |||||||| Sbjct 8353 ATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTGA 8294 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468 ||||| || ||||| | |||||| | || || |||||||||| ||| Sbjct 8293 AATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAA 8247 >seq545 Length=42957 Score = 102 bits (112), Expect = 9e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || ||| | ||||| ||||| || || || ||||| || ||| | Sbjct 28595 CAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGT 28536 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || |||||||| |||||||| |||| ||||||||| ||||| || ||| Sbjct 28535 CCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAAT 28476 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT-GCT 93270 ||||| || || || ||||| || | | |||||| |||| || ||||| || Sbjct 28475 ATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCA 28416 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310 | |||| | ||||||||| ||||||||||| ||| || Sbjct 28415 G-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 28377 >seq6 Length=123133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || ||||| || ||| | ||||| || || || || || ||||| || ||| Sbjct 115757 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 115816 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | | || |||||||| |||||||| |||| ||||||||| ||||| || Sbjct 115817 CAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 115876 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||||| || || | ||||| || | | |||||| |||| || ||||| Sbjct 115877 GAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 115936 Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310 || | |||| | |||||| || ||||||||||| ||| || Sbjct 115937 AGCAG-TCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAA 115979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556678455931040