Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4503 105 6e-18 seq10671 100 2e-16 seq8172 100 2e-16 seq10756 95.1 1e-14 seq18229 87.8 2e-12 seq16001 87.8 2e-12 seq13147 87.8 2e-12 seq12421 87.8 2e-12 seq11515 87.8 2e-12 seq856 87.8 2e-12 seq91 87.8 2e-12 seq554 86.0 5e-12 seq20290 82.4 6e-11 seq5662 82.4 6e-11 seq3835 82.4 6e-11 seq659 82.4 6e-11 seq422 82.4 6e-11 >seq4503 Length=16266 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || || || || | ||||||||||||||| || | Sbjct 7949 ATGCAAATTTTTGTGAAGACTCTTACGGGAAAGACTATTACTCTTGAAGTGGAAGCCTCG 8008 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| || ||||| ||||| |||||||||||||| ||||| Sbjct 8009 GATACCATTGAGAATGTGAAAGCTAAGATTCAGGACAAAGAGGGTATTCCACCTGATCAG 8068 Query 22339 CAACGTCT 22346 || ||||| Sbjct 8069 CAGCGTCT 8076 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || |||||||| || || || ||||||||||||| || | | Sbjct 8485 ATGCAAATCTTTGTCAAGACTTTAACTGGAAAGACTATCACTCTTGAAGTTGAGGCATCT 8544 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||||||||| ||||| || ||||| Sbjct 8545 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGGATTCCGCCAGATCAG 8604 Query 22339 CAACG 22343 || || Sbjct 8605 CAGCG 8609 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || || || || || || ||||||| ||||| || | | Sbjct 8215 ATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTCGAAGTTGAGGCATCG 8274 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| |||||||||||||| ||||| |||||||| || || Sbjct 8275 GATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCACCAGACCAG 8334 Query 22339 CAACGTCT--TATATTTGCC 22356 || ||||| | | |||||| Sbjct 8335 CAGCGTCTGGTTTGTTTGCC 8354 >seq10671 Length=7258 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || || || | ||||| ||||||||| || | Sbjct 3456 ATGCAAATTTTTGTTAAGACACTTACGGGAAAGACTATTACTCTGGAAGTGGAAGCCTCG 3515 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 3516 GATACTATTGAGAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCACCTGATCAG 3575 Query 22339 CAACGTCT 22346 || ||||| Sbjct 3576 CAGCGTCT 3583 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || || || | ||||||||||| || | | Sbjct 3992 ATGCAGATCTTTGTCAAAACTCTGACTGGAAAGACTATAACTCTTGAAGTTGAGGCATCT 4051 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||||||||| |||||||| ||||| Sbjct 4052 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAG 4111 Query 22339 CAACG 22343 || || Sbjct 4112 CAGCG 4116 >seq8172 Length=9710 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| || ||||| || ||||||| ||||| || | | Sbjct 9278 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAGACTATCACTCTCGAAGTTGAGGCATCT 9219 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||||||||| |||||||| ||||| Sbjct 9218 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAG 9159 Query 22339 CAACG 22343 || || Sbjct 9158 CAGCG 9154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || || || || || || ||||||| ||||| || | | Sbjct 9552 ATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTCGAAGTTGAGGCATCG 9493 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| |||||||||||||| ||||| |||||||| || || Sbjct 9492 GATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCACCAGACCAG 9433 Query 22339 CAACGTCT--TATATTTGCC 22356 || ||||| | | |||||| Sbjct 9432 CAGCGTCTGGTTTGTTTGCC 9413 >seq10756 Length=7202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| |||||||| |||||||||||||| || || | || |||||||| || | Sbjct 4869 AAGGATGCAGATTTTTGTCAAAACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 4810 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| || | || || | || || |||||||| |||||||| |||||||| || Sbjct 4809 ATCCGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCGGA 4750 Query 22335 TCAACAACGT 22344 |||||| ||| Sbjct 4749 TCAACAGCGT 4740 >seq18229 Length=3682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || || Sbjct 1639 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 1698 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | |||||| | || || | || |||||||||||| || |||||||| || || | Sbjct 1699 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 1758 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 1759 ATCAACAGCGT 1769 >seq16001 Length=4432 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || || Sbjct 1948 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 2007 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | |||||| | || || | || |||||||||||| || |||||||| || || | Sbjct 2008 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 2067 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 2068 ATCAACAGCGT 2078 >seq13147 Length=5676 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || |||||| ||||||||||||| || | Sbjct 5354 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 5295 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || |||||||||||||||||| || ||||| || ||| Sbjct 5294 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 5235 Query 22336 CAACAACG 22343 || || || Sbjct 5234 CAGCAGCG 5227 >seq12421 Length=6087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || || Sbjct 965 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 1024 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | |||||| | || || | || |||||||||||| || |||||||| || || | Sbjct 1025 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 1084 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 1085 ATCAACAGCGT 1095 >seq11515 Length=6677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || |||||| ||||||||||||| || | Sbjct 4677 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 4736 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || |||||||||||||||||| || ||||| || ||| Sbjct 4737 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 4796 Query 22336 CAACAACG 22343 || || || Sbjct 4797 CAGCAGCG 4804 >seq856 Length=36659 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || |||||| ||||||||||||| || | Sbjct 4734 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 4793 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || |||||||||||||||||| || ||||| || ||| Sbjct 4794 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 4853 Query 22336 CAACAACG 22343 || || || Sbjct 4854 CAGCAGCG 4861 >seq91 Length=67459 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || || Sbjct 15064 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 15123 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | |||||| | || || | || |||||||||||| || |||||||| || || | Sbjct 15124 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 15183 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 15184 ATCAACAGCGT 15194 >seq554 Length=42686 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 129400 GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTC 129459 ||||| |||||| ||||||||||| ||| |||| |||||||| ||||| |||| Sbjct 11451 GCCAACTCGCAAGAAGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTT 11510 Query 129460 AACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAA 129519 ||| |||||||||||||||| | | || | ||||| || ||| | ||||||||| Sbjct 11511 AACTCTTTGGCCTGGTCGCTAACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAA 11570 Query 129520 CC 129521 || Sbjct 11571 CC 11572 >seq20290 Length=3127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| |||||||| || ||||||||||| || || | || |||||||| || | Sbjct 654 AAGGATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 713 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || || |||||||| |||||||| ||||| || || Sbjct 714 GTCTGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 773 Query 22335 TCAACAACGT 22344 |||||| ||| Sbjct 774 TCAACAGCGT 783 >seq5662 Length=13541 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| |||||||| || ||||||||||| || || | || |||||||| || | Sbjct 7182 AAGGATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 7241 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || || |||||||| |||||||| ||||| || || Sbjct 7242 GTCTGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 7301 Query 22335 TCAACAACGT 22344 |||||| ||| Sbjct 7302 TCAACAGCGT 7311 >seq3835 Length=18222 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| |||||||| || ||||||||||| || || | || |||||||| || | Sbjct 17810 AAGGATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 17869 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || || |||||||| |||||||| ||||| || || Sbjct 17870 GTCTGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 17929 Query 22335 TCAACAACGT 22344 |||||| ||| Sbjct 17930 TCAACAGCGT 17939 >seq659 Length=40447 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || |||||| ||||||||||||| || | Sbjct 38544 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 38485 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || | | || |||||||||||||||||| || ||||| || ||| Sbjct 38484 TCTGATACCATCGAAAACGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 38425 Query 22336 CAACAACG 22343 || || || Sbjct 38424 CAGCAGCG 38417 >seq422 Length=46818 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| |||||||| || ||||||||||| || || | || |||||||| || | Sbjct 44249 AAGGATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 44308 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || || |||||||| |||||||| ||||| || || Sbjct 44309 GTCTGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 44368 Query 22335 TCAACAACGT 22344 |||||| ||| Sbjct 44369 TCAACAGCGT 44378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419593996064740