Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq22364 100 7e-16
seq16268 91.5 3e-13
seq9317 91.5 3e-13
seq8967 91.5 3e-13
seq5419 91.5 3e-13
seq1038 91.5 3e-13
seq5107 86.0 1e-11
seq659 86.0 1e-11
>seq22364
Length=2645
Score = 100 bits (110), Expect = 7e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| |||||||| | ||| || || || || |||||||| ||||||||||| |||
Sbjct 2194 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGA 2135
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
|| || || ||||| || || || |||||||| || || || || ||||| ||
Sbjct 2134 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 2075
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || | || || || | |||||||||||||| || || || ||||| || |
Sbjct 2074 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 2015
Query 288469 TGCAT 288473
|||||
Sbjct 2014 TGCAT 2010
>seq16268
Length=4329
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| ||||| || | ||| || || || || ||||| || ||||||||||| |||
Sbjct 3175 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 3234
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
|| || || ||||| || || || |||||||| || || || || ||||| ||
Sbjct 3235 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 3294
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || | || || || | |||||||||||||| || || || ||||| || |
Sbjct 3295 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 3354
Query 288469 TGCAT 288473
|||||
Sbjct 3355 TGCAT 3359
>seq9317
Length=8507
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| ||||| || | ||| || || || || ||||| || ||||||||||| |||
Sbjct 946 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 887
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
|| || || ||||| || || || |||||||| || || || || ||||| ||
Sbjct 886 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 827
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || | || || || | |||||||||||||| || || || ||||| || |
Sbjct 826 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 767
Query 288469 TGCAT 288473
|||||
Sbjct 766 TGCAT 762
>seq8967
Length=8834
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| ||||| || | ||| || || || || ||||| || ||||||||||| |||
Sbjct 6516 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 6575
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
|| || || ||||| || || || |||||||| || || || || ||||| ||
Sbjct 6576 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 6635
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || | || || || | |||||||||||||| || || || ||||| || |
Sbjct 6636 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 6695
Query 288469 TGCAT 288473
|||||
Sbjct 6696 TGCAT 6700
>seq5419
Length=14078
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| ||||| || | ||| || || || || ||||| || ||||||||||| |||
Sbjct 13746 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 13687
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
|| || || ||||| || || || |||||||| || || || || ||||| ||
Sbjct 13686 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 13627
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || | || || || | |||||||||||||| || || || ||||| || |
Sbjct 13626 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 13567
Query 288469 TGCAT 288473
|||||
Sbjct 13566 TGCAT 13562
>seq1038
Length=34009
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| ||||| || | ||| || || || || ||||| || ||||||||||| |||
Sbjct 17488 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 17429
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
|| || || ||||| || || || |||||||| || || || || ||||| ||
Sbjct 17428 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 17369
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || | || || || | |||||||||||||| || || || ||||| || |
Sbjct 17368 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 17309
Query 288469 TGCAT 288473
|||||
Sbjct 17308 TGCAT 17304
>seq5107
Length=14694
Score = 86.0 bits (94), Expect = 1e-11
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| ||||| || | ||| || || || || ||||| || ||||||||||| |||
Sbjct 12798 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 12739
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
|| || || ||||| || || || |||||||| || || || || || || ||
Sbjct 12738 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 12679
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || | || || || | |||||||||||||| || || || ||||| || |
Sbjct 12678 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 12619
Query 288469 TGCAT 288473
|||||
Sbjct 12618 TGCAT 12614
>seq659
Length=40447
Score = 86.0 bits (94), Expect = 1e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|||||||||||||| ||||| || || || || |||||||| || | ||| | |||
Sbjct 37890 GGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTTTCAATGGTATCAGAAGCTTCC 37949
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || ||||| ||||| || || || ||||| || || ||||||||
Sbjct 37950 ACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGCAT 37999
Score = 86.0 bits (94), Expect = 1e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || ||||| || || || ||||| || ||||||||||| || | ||| | ||
Sbjct 38432 GGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGATGGTATCAGAAGCCTCG 38491
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || |||||||| || || || |||||||||||||| ||||||||
Sbjct 38492 ACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTGCAT 38541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179258465220888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |