Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq10671 87.8 2e-12 seq8172 84.2 2e-11 seq4503 84.2 2e-11 >seq10671 Length=7258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 ||||||||||| || || || ||||| || ||||| ||||| ||| ||| || | | Sbjct 3303 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 3244 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 || ||| ||| || ||||| | ||| | |||||| || ||||| || |||||||| || Sbjct 3243 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 3184 Query 64439 TGCAtttt 64446 ||||| || Sbjct 3183 TGCATATT 3176 >seq8172 Length=9710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 || ||||||||||| || ||||| || ||||| ||||| ||||| ||||| || || Sbjct 9425 AGACGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTC 9483 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||| || || ||||| | ||| | |||||||| ||||| || || ||||| Sbjct 9484 AATCGTATCCGATGCCTCAACTTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAA 9543 Query 64435 AATTTGCAtt 64444 |||||||||| Sbjct 9544 AATTTGCATT 9553 >seq4503 Length=16266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 || ||||||||||| || ||||| || ||||| ||||| ||||| ||||| || || Sbjct 8342 AGACGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTC 8284 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||| || || ||||| | ||| | |||||||| ||||| || || ||||| Sbjct 8283 AATCGTATCCGATGCCTCAACTTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAA 8224 Query 64435 AATTTGCAtt 64444 |||||||||| Sbjct 8223 AATTTGCATT 8214 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 ||||||||||| || || || ||||| || ||||| ||||| ||| ||| || | Sbjct 7800 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATC 7741 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 || ||| ||| || ||||| | ||| | |||||| || ||||| || |||||||| || Sbjct 7740 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 7681 Query 64439 TGCAtttt 64446 ||||| || Sbjct 7680 TGCATATT 7673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499481191310240