Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq10671 87.8 2e-12
seq8172 84.2 2e-11
seq4503 84.2 2e-11
>seq10671
Length=7258
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378
||||||||||| || || || ||||| || ||||| ||||| ||| ||| || | |
Sbjct 3303 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 3244
Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438
|| ||| ||| || ||||| | ||| | |||||| || ||||| || |||||||| ||
Sbjct 3243 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 3184
Query 64439 TGCAtttt 64446
||||| ||
Sbjct 3183 TGCATATT 3176
>seq8172
Length=9710
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374
|| ||||||||||| || ||||| || ||||| ||||| ||||| ||||| || ||
Sbjct 9425 AGACGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTC 9483
Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434
| ||||| || || ||||| | ||| | |||||||| ||||| || || |||||
Sbjct 9484 AATCGTATCCGATGCCTCAACTTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAA 9543
Query 64435 AATTTGCAtt 64444
||||||||||
Sbjct 9544 AATTTGCATT 9553
>seq4503
Length=16266
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374
|| ||||||||||| || ||||| || ||||| ||||| ||||| ||||| || ||
Sbjct 8342 AGACGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTC 8284
Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434
| ||||| || || ||||| | ||| | |||||||| ||||| || || |||||
Sbjct 8283 AATCGTATCCGATGCCTCAACTTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAA 8224
Query 64435 AATTTGCAtt 64444
||||||||||
Sbjct 8223 AATTTGCATT 8214
Score = 82.4 bits (90), Expect = 8e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378
||||||||||| || || || ||||| || ||||| ||||| ||| ||| || |
Sbjct 7800 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATC 7741
Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438
|| ||| ||| || ||||| | ||| | |||||| || ||||| || |||||||| ||
Sbjct 7740 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 7681
Query 64439 TGCAtttt 64446
||||| ||
Sbjct 7680 TGCATATT 7673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499481191310240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |