Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq22862 82.4 8e-11 seq13211 82.4 8e-11 seq545 82.4 8e-11 >seq22862 Length=2551 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 52755 AACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTT 52814 || ||||| ||||| ||||| |||||| | |||||||| |||| || |||||||||||| Sbjct 2241 AAAGCTCGAAATCCTTTTGATTTTATGGAGAACATTTCTATTGAAGGGAAGACCAACTTT 2182 Query 52815 TTCGAGAAGCGAGTC 52829 ||||||||| |||| Sbjct 2181 TTCGAGAAGAAAGTC 2167 >seq13211 Length=5644 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 52755 AACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTT 52814 || ||||| ||||| ||||| |||||| | |||||||| |||| || |||||||||||| Sbjct 5303 AAAGCTCGAAATCCTTTTGATTTTATGGAGAACATTTCTATTGAAGGGAAGACCAACTTT 5362 Query 52815 TTCGAGAAGCGAGTC 52829 ||||||||| |||| Sbjct 5363 TTCGAGAAGAAAGTC 5377 >seq545 Length=42957 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 52755 AACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTT 52814 || ||||| ||||| ||||| |||||| | |||||||| |||| || |||||||||||| Sbjct 29132 AAAGCTCGAAATCCTTTTGATTTTATGGAGAACATTTCTATTGAAGGGAAGACCAACTTT 29191 Query 52815 TTCGAGAAGCGAGTC 52829 ||||||||| |||| Sbjct 29192 TTCGAGAAGAAAGTC 29206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496099898877120