Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq22364 109 5e-19 seq16268 100 3e-16 seq9317 100 3e-16 seq8967 100 3e-16 seq5419 100 3e-16 seq1038 100 3e-16 seq783 100 3e-16 seq5107 95.1 1e-14 seq13147 93.3 4e-14 seq11515 93.3 4e-14 seq856 93.3 4e-14 seq659 93.3 4e-14 >seq22364 Length=2645 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| ||| ||| ||| ||| ||| || | ||||| || ||| |||| | Sbjct 2194 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGA 2135 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 2134 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 2075 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 2074 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 2016 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 2015 TTGCATGGC 2007 >seq16268 Length=4329 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 3175 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 3234 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 3235 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 3294 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 3295 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 3353 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 3354 TTGCATGGC 3362 >seq9317 Length=8507 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 946 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 887 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 886 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 827 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 826 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 768 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 767 TTGCATGGC 759 >seq8967 Length=8834 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 6516 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 6575 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 6576 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 6635 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 6636 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 6694 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 6695 TTGCATGGC 6703 >seq5419 Length=14078 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 13746 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 13687 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 13686 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 13627 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 13626 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 13568 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 13567 TTGCATGGC 13559 >seq1038 Length=34009 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 17488 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 17429 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 17428 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 17369 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 17368 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 17310 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 17309 TTGCATGGC 17301 >seq783 Length=38083 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | ||| || || ||| |||| | Sbjct 21110 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 21051 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | |||| | Sbjct 21050 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 20991 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 20990 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 20932 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 20931 TTGCATGGC 20923 >seq5107 Length=14694 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 12798 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 12739 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | |||| | Sbjct 12738 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 12679 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 12678 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 12620 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 12619 TTGCATGGC 12611 >seq13147 Length=5676 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| ||||| ||||| ||||||| | ||| ||| || ||| | | || Sbjct 5223 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACATTTT 5281 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||||||||| | || | |||||| || || ||||| || || | Sbjct 5282 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 5341 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 5342 AGATCTGCAT 5351 >seq11515 Length=6677 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| ||||| ||||| ||||||| | ||| ||| || ||| | | || Sbjct 4808 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACATTTT 4750 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||||||||| | || | |||||| || || ||||| || || | Sbjct 4749 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 4690 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 4689 AGATCTGCAT 4680 >seq856 Length=36659 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| ||||| ||||| ||||||| | ||| ||| || ||| | | || Sbjct 4865 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACATTTT 4807 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||||||||| | || | |||||| || || ||||| || || | Sbjct 4806 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 4747 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 4746 AGATCTGCAT 4737 >seq659 Length=40447 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| ||||| ||||| ||||||| | ||| ||| || ||| | | || Sbjct 38413 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACGTTTT 38471 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||||||||| | || | |||||| || || ||||| || || | Sbjct 38472 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 38531 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 38532 AGATCTGCAT 38541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475345097263040